YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109476905, gi...
Organism:	Rattus norvegicus
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109476905, gi....

Description	E-value	Query Range	Subject Range
gi\|109475302 - gi\|109475302\|ref\|XP_001071243.1\| PREDICTED: similar to RING finger protein 11 (NEDD4 WW domain-bindi...	3.0E-31	[1..154]	[106..259]
gi\|47220373 - gi\|47220373\|emb\|CAF98472.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-31	[1..154]	[1..154]
gi\|30584033, gi\|... - gi\|61369935\|gb\|AAX43415.1\| ring finger protein 11 [synthetic construct], gi\|61369928\|gb\|AAX43414.1\| ...	5.0E-31	[1..154]	[1..154]
RNF11_MOUSE - RING finger protein 11 OS=Mus musculus GN=Rnf11 PE=1 SV=1	6.0E-31	[1..154]	[1..154]
gi\|80476313, gi\|... - gi\|80476313\|gb\|AAI08493.1\| Rnf11-a protein [Xenopus laevis], gi\|27696226\|gb\|AAH43736.1\| Rnf11-a prot...	8.0E-31	[1..154]	[1..154]
gi\|53132254, gi\|... - gi\|57529639\|ref\|NP_001006540.1\| ring finger protein 11 [Gallus gallus], gi\|53132254\|emb\|CAG31887.1\| ...	1.0E-30	[1..154]	[1..154]
gi\|62858331, gi\|... - gi\|89273822\|emb\|CAJ83667.1\| ring finger protein 11 [Xenopus tropicalis], gi\|62858331\|ref\|NP_00101643...	1.0E-30	[1..154]	[1..154]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCLKSPTS DDISLLHESQ SDRASFGEGT EPDQEPPPPY QEQVPVPVYH PTPSQTRLAT  60
   61 QLTEEEQIRI AQRIGLIQHL PKGVYDPGRD GSEKKIRECV ICMMDFVYGD PIRFLPCMHI 120
  121 YHLDCIDDWL MRSFTCPSCM EPVDAALLSS YETN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1x4jA
Description:	Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits