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View Structure Prediction Details

Protein: gi|114594177
Organism: Pan troglodytes
Length: 687 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114594177.

Description E-value Query
Range
Subject
Range
gi|114594179 - gi|114594179|ref|XP_001152494.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
969.0 [0..1] [672..1]
gi|109074438 - gi|109074438|ref|XP_001099342.1| PREDICTED: similar to SDA1 domain containing 1 isoform 3 [Macaca mu...
941.0 [0..1] [687..1]
SDA1_MOUSE - Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
931.0 [0..1] [687..1]
SDA1_RAT - Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1
gi|55741772 - ref|NP_001006959.1| SDA1 domain containing 1 [Rattus norvegicus]
923.0 [0..1] [687..1]
gi|50746659 - gi|50746659|ref|XP_420597.1| PREDICTED: similar to SDA1 domain containing 1 [Gallus gallus]
921.0 [0..1] [686..1]
gi|74001871 - gi|74001871|ref|XP_535608.2| PREDICTED: similar to SDA1 domain containing 1 [Canis familiaris]
895.0 [0..1] [687..1]
SDA1_DANRE - Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1
880.0 [0..1] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRNNNKLP SNLPQLQNLI KRDPPAYIEE FLQQYNHYKS NVEIFKLQPN KPSKELAELV  60
   61 MFMAQISHCY PEYLSNFPQE VKDLLSCNHT VLDPDLRMTF CKALILLRNK NL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INPSSLLELF FELFRCHDKL LRKTLYTHIV TDIKNINAKH KNNKVNVVLQ NFMYTMLRDS  60
   61 NATAAKMSLD VMIELYRRNI WNDAKTVNVI TTACFSKVTK ILVAALTFFL GKDEDEKQDS 120
  121 DSESEDDGPT ARDLLVQYAT GKKSSKNKKK LEKAMKVLKK QKKKKKPEVF NFSAIHLIHD 180
  181 PQDFAEKLLK QLECCKERFE VKMMLMNLIS RLVGIHELFL FNFYPFLQRF LQPH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [347-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QREVTKILLF AAQASHHLVP PEIIQSLLMT VANNFVTDKN SGEVMTVGIN AIKEITARCP  60
   61 LAMTEELLQD LAQYKTHKDK NVMMSARTLI HLFRTLNPQM LQKKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [452-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGKPTEASIE ARVQEYGELD AKDYIPGAEV LEVEKEENAE NDEDGWESTS LSEEEDADGE  60
   61 WIDVQHSSDE EQQEISKKLN SMPMEERKAK AAAISTSRVL TQEDFQKIRM AQMRKELDAA 120
  121 PGKSQKRKYI EIDSDEEPRG ELLSLRDIER LHKKPKSDKE TRLATAMAGK TDRKEFVRKK 180
  181 TKTNPFSSST NKEKKKQKNF MMMRYSQNVR SKNKRSFREK QLALRDALLK KRKRMK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle