YRC Public Data Repository - Protein Structure Prediction

Protein:	RS2_RAT
Organism:	Rattus norvegicus
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS2_RAT.

Description	E-value	Query Range	Subject Range
gi\|2920833 - gi\|2920833\|gb\|AAC04625.1\| ribosomal protein S2 [Rattus norvegicus]	467.0	[0..47]	[293..4]
gi\|82918273, gi\|... - gi\|94383782\|ref\|XP_997963.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|82918273\|ref\|XP_9071...	466.0	[0..54]	[293..54]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	464.0	[0..54]	[293..54]
gi\|73962610 - gi\|73962610\|ref\|XP_850151.1\| PREDICTED: similar to 40S ribosomal protein S2 isoform 2 [Canis familia...	464.0	[0..54]	[293..60]
RPS2 - ribosomal protein S2 gi\|109108083, gi... - gi\|109108083\|ref\|XP_001095648.1\| PREDICTED: similar to ribosomal protein S2 isoform 5 [Macaca mulatt... gi\|114660380, gi... - gi\|55644549\|ref\|XP_511195.1\| PREDICTED: similar to 40S ribosomal protein S2 (S4) (LLRep3 protein) is... gi\|123997961, gi... - gi\|60656433\|gb\|AAX32780.1\| ribosomal protein S2 [synthetic construct], gi\|123997961\|gb\|ABM86582.1\| r...	463.0	[0..54]	[293..54]
gi\|114660388 - gi\|114660388\|ref\|XP_001161133.1\| PREDICTED: similar to 40S ribosomal protein S2 (S4) (LLRep3 protein...	463.0	[0..54]	[293..32]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDAGAAGG PGGPGGPGLG GRGGFRGGFG SGLRGRGRGR GRGRGRGRGA RGGKAEDKEW  60
   61 IPVTKLGRLV KDMKIKSLEE IYLFSLPIKE SEIIDFFLGA SLKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.332	a.24.17	Group V grass pollen allergen
View	Download	0.257	a.24.17	Group V grass pollen allergen

Predicted Domain #2

Region A:
Residues: [105-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVLKIMPVQK QTRAGQRTRF KAFVAIGDYN GHVGLGVKCS KEVATAIRGA IILAKLSIVP  60
   61 VRRGYWGNKI GKPHTVPCKV TGRCGSVLVR LIPAPRGTGI VSAPVPKKLL MMAGIDDCYT 120
  121 SARGCTATLG NFAKATFDAI SKTYSYLTPD LWKETVFTKS PYQEFTDHLV KTHTRVSVQR 180
  181 TQAPAVATT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1s1hE
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits