| Protein: | CNBP_RAT |
| Organism: | Rattus norvegicus |
| Length: | 177 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNBP_RAT.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-39 | [4..152] | [346..488] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MSSNECFKCG RSGHWARECP TGGGRGRGMR SRGRGGFTSD RGFQFVSSSL PDICYRCGES 60
61 GHLAKDCDLQ EDACYNCGRG GHIAKDCKEP KRE
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [94-177] |
1 11 21 31 41 51
| | | | | |
1 REQCCYNCGK PGHLARDCDH ADEQKCYSCG EFGHIQKDCT KVKCYRCGET GHVAINCSKT 60
61 SEVNCYRCGE SGHLARECTI EATA
|
| Detection Method: | |
| Confidence: | 2.02 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
