YRC Public Data Repository - Protein Structure Prediction

Protein:	GROA_RAT
Organism:	Rattus norvegicus
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GROA_RAT.

Description	E-value	Query Range	Subject Range
gi\|111036708, gi... - gi\|111036708\|dbj\|BAF02384.1\| interleukin-8 [Anas platyrhynchos], gi\|111036706\|dbj\|BAF02383.1\| interl...	95.0	[0..1]	[95..1]
gi\|83016753, gi\|... - gi\|83016753\|dbj\|BAE53442.1\| Interleukin-8 [Anser cygnoides], gi\|156138762\|dbj\|BAF75873.1\| interleuki... gi\|88702700 - gi\|88702700\|gb\|ABD49205.1\| IL-8 [Anser anser]	95.0	[0..1]	[95..1]
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	95.0	[0..3]	[96..4]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	93.0	[0..3]	[96..4]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	93.0	[0..3]	[95..12]
gi\|149053671, gi... - gi\|61889094\|ref\|NP_112378.2\| chemokine (C-C motif) ligand 5 [Rattus norvegicus], gi\|34784754\|gb\|AAH5...	93.0	[0..1]	[93..1]
gi\|114671857 - gi\|114671857\|ref\|XP_001172226.1\| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor ...	93.0	[0..3]	[91..42]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	92.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSATRSLLC AALPVLATSR QATGAPVANE LRCQCLQTVA GIHFKNIQSL KVMPPGPHCT  60
   61 QTEVIATLKN GREACLDPEA PMVQKIVQKM LKGVPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1f9pA
Description:	CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits