YRC Public Data Repository - Protein Structure Prediction

Protein:	ARP19_RAT
Organism:	Rattus norvegicus
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP19_RAT.

Description	E-value	Query Range	Subject Range
gi\|76649484 - gi\|76649484\|ref\|XP_875557.1\| PREDICTED: similar to cAMP-regulated phosphoprotein 19 (ARPP-19) [Bos t...	189.0	[0..1]	[112..276]
gi\|109016435 - gi\|109016435\|ref\|XP_001106271.1\| PREDICTED: similar to endosulfine alpha isoform 6 [Macaca mulatta]	176.0	[0..14]	[112..62]
gi\|30268365 - gi\|30268365\|emb\|CAD89929.1\| hypothetical protein [Homo sapiens]	172.0	[0..1]	[112..22]
ARP19_CHICK - cAMP-regulated phosphoprotein 19 OS=Gallus gallus GN=ARPP19 PE=3 SV=3	167.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEVPEAAS AEEQKEMEDK VTSPEKAEEA KLKARYPHLG QKPGGSDFLR KRLQKGQKYF  60
   61 DSGDYNMAKA KMKNKQLPAA APDKTEVTGD HIPTPQDLPQ RKPSLVASKL AG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.167491
Match:	PF04667.8
Description:	No description for PF04667.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits