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View Structure Prediction Details

Protein: gi|125546265
Organism: Oryza sativa Indica Group
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125546265.

Description E-value Query
Range
Subject
Range
gi|110818507, gi... - gi|111018977|ref|YP_701949.1| transcription antitermination protein NusG [Rhodococcus jostii RHA1], ...
220.0 [0..36] [328..12]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAYPLLRL PCRCSLAAAA VPAPPRASPG PTISVSMSVD GGEGELTGRE RRKQRGERRE  60
   61 LRARDWKEEV QERLIHEPAR RRKKPPKRTW RENLNLDFLA EHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-330]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQWWLVRVSM APGTDYVDLL TKAISRRYPE LSFKIYNPSI QVKKRLKNGS ISTKSKPLHP  60
   61 GLVFLYCTLN KEVHDFIRDT EGCYGFIGAT VGSIKRQIKK PKPIPVEEVE SIIREEKEEQ 120
  121 ERVDREFEEM ENGGIVESFN KPVEDSELML MNKIKRQFKK PISKGGSNHN AFTPGASVHV 180
  181 LSGPFEGFTG SLLEVNRKNK KATLQLTLFG KESFVDLDFD QIEAVDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.30103
Match: 1m1gA
Description: N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural molecule activity 0.40620600182989 bayes_pls_golite062009
structural constituent of ribosome 0.40159834939744 bayes_pls_golite062009
transcription regulator activity 0.12965224171975 bayes_pls_golite062009
transcription termination factor activity 0.00155498487487993 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle