YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123982932, gi...
Organism:	synthetic construct
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123982932, gi....

Description	E-value	Query Range	Subject Range
gi\|22760414, gi\|... - gi\|31982911\|ref\|NP_115881.2\| jagunal homolog 1 [Homo sapiens], gi\|22760414\|dbj\|BAC11188.1\| unnamed p...	5.0E-76	[1..183]	[1..183]
CCDS2588.1_1 - null gi\|114585396 - gi\|114585396\|ref\|XP_516267.2\| PREDICTED: jagunal homolog 1 [Pan troglodytes] gi\|109034681 - gi\|109034681\|ref\|XP_001093581.1\| PREDICTED: similar to jagunal homolog 1 [Macaca mulatta]	7.0E-76	[1..183]	[1..183]
gi\|53734319 - gb\|AAH83980.1\| Unknown (protein for MGC:98056) [Xenopus laevis] JAGN1_MOUSE - Protein jagunal homolog 1 OS=Mus musculus GN=Jagn1 PE=1 SV=2 JAGN1_RAT - Protein jagunal homolog 1 OS=Rattus norvegicus GN=Jagn1 PE=2 SV=1	1.0E-75	[1..183]	[1..183]
gi\|57101048 - gi\|57101048\|ref\|XP_541776.1\| PREDICTED: similar to jagunal homolog 1 [Canis familiaris]	1.0E-75	[1..183]	[1..183]
JAGN1_BOVIN - Protein jagunal homolog 1 OS=Bos taurus GN=JAGN1 PE=2 SV=1	2.0E-75	[1..183]	[1..183]
JAGN1_XENTR - Protein jagunal homolog 1 OS=Xenopus tropicalis GN=jagn1 PE=2 SV=1	1.0E-72	[1..183]	[1..183]
JAGN1_XENLA - Protein jagunal homolog 1 OS=Xenopus laevis GN=jagn1 PE=2 SV=1	2.0E-70	[1..183]	[1..183]
JGN1A_DANRE - Protein jagunal homolog 1-A OS=Danio rerio GN=jagn1a PE=2 SV=1	6.0E-65	[1..183]	[1..183]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAGPRAA GTDGSDFQHR ERVAMHYQMS VTLKYEIKKL IYVHLVIWLL LVAKMSVGHL  60
   61 RLLSHDQVAM PYQWEYPYLL SILPSLLGLL SFPRNNISYL VLSMISMGLF SIAPLIYGSM 120
  121 EMFPAAQQLY RHGKAYRFLF GFSAVSIMYL VLVLAVQVHA WQLYYSKKLL DSWFTSTQEK 180
  181 KHK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	133.958607
Match:	PF07086.3
Description:	No description for PF07086.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits