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View Structure Prediction Details

Protein: CX7A2_RAT
Organism: Rattus norvegicus
Length: 83 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX7A2_RAT.

Description E-value Query
Range
Subject
Range
gi|119569131, gi... - gi|56203513|emb|CAI19899.1| cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Homo sapiens], ...
132.0 [0..1] [83..33]
gi|74354141 - gi|74354141|gb|AAI02665.1| Cytochrome c oxidase subunit VIIa polypeptide 2 (liver) [Bos taurus]
131.0 [0..1] [83..1]
gi|114608148, gi... - gi|114608148|ref|XP_001143369.1| PREDICTED: similar to cytochrome c oxidase subunit VIIa polypeptide...
130.0 [0..1] [83..33]
CX7A2_MOUSE - Cytochrome c oxidase subunit 7A2, mitochondrial OS=Mus musculus GN=Cox7a2 PE=1 SV=2
129.0 [0..1] [83..1]
gi|73973818 - gi|73973818|ref|XP_853871.1| PREDICTED: similar to cytochrome c oxidase, subunit 7a 3 [Canis familia...
129.0 [0..1] [83..1]
CX7A1_PIG - Cytochrome c oxidase subunit 7A1, mitochondrial OS=Sus scrofa GN=COX7A1 PE=3 SV=1
128.0 [0..4] [82..2]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRNVLALRQ IAQRTISTTS RRHFENKVPE KQKLFQEDNG MPVHLKGGTS DALLYRATML  60
   61 LTVGGTAYAI YMLAMAAFPK KQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1occJ
Description: Mitochondrial cytochrome c oxidase subunit VIIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 3.34880493269526 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 3.34880493269526 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 3.34880493269526 bayes_pls_golite062009
heme-copper terminal oxidase activity 3.12044190384374 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.42851552159213 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 2.29138932748536 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 1.77050600432638 bayes_pls_golite062009
cation transmembrane transporter activity 1.52720174806199 bayes_pls_golite062009
ion transmembrane transporter activity 1.34701554601979 bayes_pls_golite062009
oxidoreductase activity 1.20876870883574 bayes_pls_golite062009
catalytic activity 0.287695754348243 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle