YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123999658, gi...
Organism:	synthetic construct
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123999658, gi....

Description	E-value	Query Range	Subject Range
gi\|56204926, gi\|... - gi\|56204926\|emb\|CAI20472.1\| novel protein similar to cytochrome c oxidase subunit VIa polypeptide 1 ...	7.0E-48	[1..109]	[1..109]
gi\|114607227, gi... - gi\|55626522\|ref\|XP_518442.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-live...	4.0E-47	[1..109]	[1..109]
CX6A1_RABIT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1	5.0E-46	[1..108]	[1..108]
CX6A1_RAT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2	5.0E-45	[2..109]	[4..111]
gi\|13277855, gi\|... - gi\|74151378\|dbj\|BAE38808.1\| unnamed protein product [Mus musculus], gi\|6680988\|ref\|NP_031774.1\| cyto...	8.0E-45	[2..109]	[5..112]
gi\|76638499 - gi\|76638499\|ref\|XP_587918.2\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...	1.0E-44	[1..109]	[17..125]
gi\|109098951 - gi\|109098951\|ref\|XP_001088806.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide ...	3.0E-44	[1..109]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVGVSSVS RLLGRSRPQL GRPMSSGAHG EEGSARMWKT LTFFVALPGV AVSMLNVYLK  60
   61 SHHGEHERPE FIAYPHLRIR TKPFPWGDGN HTLFHNPHVN PLPTGYEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1occG
Description:	Mitochondrial cytochrome c oxidase subunit VIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.43268723383487	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.280428750542101	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.13082545919054	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.04800265254548	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: