YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117645348
Organism:	synthetic construct
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117645348.

Description	E-value	Query Range	Subject Range
gi\|114595970 - gi\|114595970\|ref\|XP_001156886.1\| PREDICTED: solute carrier family 25 (mitochondrial carrier; adenine...	4.0E-83	[1..315]	[1..315]
gi\|109075606 - gi\|109075606\|ref\|XP_001105150.1\| PREDICTED: similar to solute carrier family 25 (mitochondrial carri... ADT4_MACFA - ADP/ATP translocase 4 OS=Macaca fascicularis GN=SLC25A31 PE=2 SV=1	5.0E-83	[1..315]	[1..315]
gi\|73984085 - gi\|73984085\|ref\|XP_540952.2\| PREDICTED: similar to solute carrier family 25 (mitochondrial carrier; ...	1.0E-82	[1..314]	[137..454]
ADT4_BOVIN - ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE=2 SV=1	1.0E-81	[8..314]	[12..318]
ADT4_MOUSE - ADP/ATP translocase 4 OS=Mus musculus GN=Slc25a31 PE=1 SV=1	2.0E-81	[16..314]	[17..315]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHREPAKKKA EKRLFDASSF GKDLLAGGVA AAVSKTAVAP IERVKLLLQV QASSKQISPE  60
   61 ARYKGMVDCL VRIPREQGFF SFWRGNLANV IRYFPTQALN FAFKDKYKQL FMSGVNKEKQ 120
  121 FWRWFLANLA SGGAAGATSL CVVYPLDFAR TRLGVDIGKG PEERQFKGLG DCIMKIAKSD 180
  181 GIAGLYQGFG VSVQGIIVYR ASYFGAYDTV KGLLPKPKKT PFLVSFFIAQ VVTTCSGILS 240
  241 YPFDTVRRRM MMQSGEAKRQ YKGTLDCFVK IYQHEGISSF FRGAFSNVLR GTGGALVLVL 300
  301 YDKIKEFFHI DIGGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.39794
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits