YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123997081, gi...
Organism:	synthetic construct
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123997081, gi....

Description	E-value	Query Range	Subject Range
gi\|76671951 - gi\|76671951\|ref\|XP_604404.2\| PREDICTED: similar to SURF-4 [Bos taurus]	0.0	[1..269]	[86..354]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	0.0	[1..269]	[1..313]
SURF4_MOUSE - Surfeit locus protein 4 OS=Mus musculus GN=Surf4 PE=1 SV=1 gi\|55250527 - gb\|AAH86249.1\| Unknown (protein for MGC:98765) [Xenopus laevis] gi\|76443685, gi\|... - gi\|76443685\|ref\|NP_001029040.1\| surfeit 4 [Rattus norvegicus], ref\|XP_216028.2\| similar to Surf-4 pr...	1.0E-94	[1..269]	[1..269]
SURF4_CHICK - Surfeit locus protein 4 OS=Gallus gallus GN=SURF4 PE=2 SV=1	1.0E-93	[1..269]	[1..269]
SURF4_DANRE - Surfeit locus protein 4 OS=Danio rerio GN=surf4 PE=2 SV=1	2.0E-93	[1..269]	[1..269]
SURF4_TAKRU - Surfeit locus protein 4 OS=Takifugu rubripes GN=surf4 PE=3 SV=1	2.0E-93	[1..269]	[1..269]
gi\|145013229, gi... - gi\|39959108\|ref\|XP_364464.1\| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb\|EAA55502....	3.0E-93	[3..267]	[35..300]
gi\|85113270 - gi\|85113270\|ref\|XP_964496.1\| hypothetical protein NCU03319 [Neurospora crassa OR74A] gi\|32420623, gi\|... - gi\|32420623\|ref\|XP_330755.1\| hypothetical protein [Neurospora crassa], gi\|28926280\|gb\|EAA35260.1\| hy...	7.0E-93	[7..267]	[39..300]
gi\|39849964, gi\|... - gi\|45361597\|ref\|NP_989373.1\| surfeit gene 4 [Xenopus (Silurana) tropicalis], gi\|39849964\|gb\|AAH64189...	8.0E-93	[1..269]	[1..269]

Back

Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQNDLMGTA EDFADQFLRV TKQYLPHVAR LCLISTFLED GIRMWFQWSE QRDYIDTTWN  60
   61 CGYLLASSFV FLNLLGQLTG CVLVLSRNFV QYACFGLFGI IALQTIAYSI LWDLKFLMRN 120
  121 LALGGGLLLL LAESRSEGKS MFAGVPTMRE SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKQYMQLGGR VLLVLMFMTL LHFDASFFSI VQNIVGTALM ILVAIGFKTK LAALTLVVWL  60
   61 FAINVYFNAF WTIPVYKPMH DFLKYDFFQT MSVIGGLLLV VALGPGGVSM DEKKKEW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits