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View Structure Prediction Details

Protein: gi|114587653, gi...
Organism: Pan troglodytes
Length: 224 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114587653, gi....

Description E-value Query
Range
Subject
Range
gi|109462309, gi... - gi|62667553|ref|XP_577060.1| PREDICTED: similar to family 3, member A protein [Rattus norvegicus], g...
2.0E-99 [1..222] [1..226]
FAM3A_MOUSE - Protein FAM3A OS=Mus musculus GN=Fam3a PE=2 SV=1
5.0E-99 [1..222] [1..226]
gi|109132854 - gi|109132854|ref|XP_001089464.1| PREDICTED: similar to family 3, member A protein [Macaca mulatta]
5.0E-99 [1..222] [1..226]
FAM3A_PONPY - Protein FAM3A precursor - Pongo pygmaeus (Orangutan)
gi|160213467 - gi|160213467|gb|ABX10995.1| family with sequence similarity 3, member A (predicted) [Papio anubis]
FAM3A_PONAB - Protein FAM3A OS=Pongo abelii GN=FAM3A PE=2 SV=1
8.0E-99 [1..222] [1..226]
gi|74009185 - gi|74009185|ref|XP_855396.1| PREDICTED: similar to family 3, member A protein [Canis familiaris]
3.0E-98 [1..222] [171..396]
gi|111307202, gi... - gi|115495131|ref|NP_001069777.1| family 3, member A protein [Bos taurus], gi|111307202|gb|AAI20369.1...
5.0E-95 [1..223] [1..225]
FAM3A - family with sequence similarity 3, member A
gi|190691651, gi... - gi|190691651|gb|ACE87600.1| family with sequence similarity 3, member A protein [synthetic construct...
4.0E-94 [1..222] [1..226]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSGVLRLL ALIFAIVTTW MFIRSYMSFS MKTIRLPRWL AASPTKEIQV KKYKCGLIKP  60
   61 CPANYFAFKI CSGAANVVGP TMCFEDRMIM SP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKNNVGRGLN IALVNGTTGA VLGQKAFDMY SGDVMHLVKF LKEIPGGALV LVASYDDPGT  60
   61 KMNDESRKLF SDLGSSYAKQ LGFRDSWVFI GAKDLRGKSP FEQFLKNSPD TNKYEGWPEL 120
  121 LEMEGCMPPK PF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle