YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124000127
Organism:	synthetic construct
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000127.

Description	E-value	Query Range	Subject Range
gi\|114669892 - gi\|114669892\|ref\|XP_001150302.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|14042722, gi\|... - gi\|14042722\|dbj\|BAB55367.1\| unnamed protein product [Homo sapiens], gi\|119614686\|gb\|EAW94280.1\| coil...	0.0	[1..457]	[1..457]
gi\|9295347, gi\|9... - gi\|9910242\|ref\|NP_064583.1\| coiled-coil domain containing 47 [Homo sapiens], gi\|9295347\|gb\|AAF86954....	0.0	[1..483]	[1..483]
CCD47_PONPY - Coiled-coil domain-containing protein 47 precursor - Pongo pygmaeus (Orangutan) CCD47_PONAB - Coiled-coil domain-containing protein 47 OS=Pongo abelii GN=CCDC47 PE=2 SV=2	0.0	[1..483]	[1..483]
gi\|109116833, gi... - gi\|109116833\|ref\|XP_001116319.1\| PREDICTED: similar to CG17593-PA isoform 3 [Macaca mulatta], gi\|109...	0.0	[1..483]	[1..483]
CCD47_BOVIN - Coiled-coil domain-containing protein 47 OS=Bos taurus GN=CCDC47 PE=2 SV=1	0.0	[1..483]	[1..483]
CCD47_RAT - Coiled-coil domain-containing protein 47 OS=Rattus norvegicus GN=Ccdc47 PE=2 SV=1	0.0	[1..483]	[1..483]
gi\|74205546 - gi\|74205546\|dbj\|BAE21073.1\| unnamed protein product [Mus musculus]	0.0	[1..457]	[1..457]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAFHTFCVV LLVFGSVSEA KFDDFEDEED IVEYDDNDFA EFEDVMEDSV TESPQRVIIT  60
   61 EDDEDETT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VELEGQDENQ EGDFEDADTQ EGDTESEPYD DEEFEGYEDK PDTSSSKNKD PITIVDVPAH  60
   61 LQNSWESYYL EILMVTGLLA YIMNYIIGKN KNSRLAQAWF NTHRELLESN FTLVGDDGTN 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [189-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEATSTGKLN QENEHIYNLW CSGRVCCEGM LIQLRFLKRQ DLLNVLARMM RPVSDQVQIK  60
   61 VTMNDEDMDT YVFAVGTRKA LVRLQKEMQD LSEFCSDKPK SGAKYGLPDS LAILSEMGEV 120
  121 TDGMMDTKMV HFLTHYADKI ESVHFSDQFS GPKIMQEEGQ PLKLPDTKRT LLFTFNVPGS 180
  181 GNTYPKDMEA LLPLMNMVIY SIDKAKKFRL NREGKQKADK NRARVEENFL KLTHVQRQEA 240
  241 AQSRREEKKR AEKERIMNEE DPEKQRRLEE AALRREQKKL EKKQMKMKQI KVKAM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1dg3A
Description:	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits