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View Structure Prediction Details

Protein: gi|114605402
Organism: Pan troglodytes
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114605402.

Description E-value Query
Range
Subject
Range
gi|21619084 - gi|21619084|gb|AAH32438.1| MUTED protein [Homo sapiens]
5.0E-91 [2..187] [2..187]
BL1S5_MOUSE - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Mus musculus GN=Bloc1s5 PE=1 SV=1
2.0E-89 [1..187] [1..185]
BL1S5_RAT - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Rattus norvegicus GN=Bloc1s5 PE=1 S...
1.0E-87 [1..187] [1..187]
gi|76651399 - gi|76651399|ref|XP_581818.2| PREDICTED: similar to Muted protein homolog [Bos taurus]
2.0E-73 [1..187] [30..219]
gi|74004051 - gi|74004051|ref|XP_851825.1| PREDICTED: similar to Muted protein homolog [Canis familiaris]
1.0E-72 [36..187] [107..258]
BL1S5_CHICK - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Gallus gallus GN=BLOC1S5 PE=2 SV=1
2.0E-52 [19..187] [28..196]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGTETPV GCEAAPGGGS KKRDSLGTAG SAHLIIKDLG EIHSRLLDHR PVIQGETRYF  60
   61 VKEFEEKRGL REMRVLENLK NMIHETNEHT LPKCRDTMRD SLSQVLQRLQ AANDSVCRLQ 120
  121 QREQERKKIH SDHLVASEKQ HMLQWDNFMK EQPNKRAEVD EEHRKAMERL KEQYAEMEKD 180
  181 LAKFSTF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 1ya9A
Description: Crystal Structure of the 22kDa N-Terminal Fragment of Mouse Apolipoprotein E
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle