YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|117646506
Organism:	synthetic construct
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|117646506.

Description	E-value	Query Range	Subject Range
gi\|114603452, gi... - gi\|114603460\|ref\|XP_001156606.1\| PREDICTED: sideroflexin 1 isoform 5 [Pan troglodytes], gi\|114603458...	538.0	[0..1]	[322..1]
gi\|109079814 - gi\|109079814\|ref\|XP_001082798.1\| PREDICTED: sideroflexin 1 [Macaca mulatta]	538.0	[0..1]	[322..1]
gi\|213624326, gi... - gi\|89267480\|emb\|CAJ83464.1\| Sideroflexin 1 [Xenopus tropicalis], gi\|62858971\|ref\|NP_001016244.1\| sid...	535.0	[0..1]	[322..1]
SFXN1_BOVIN - Sideroflexin-1 OS=Bos taurus GN=SFXN1 PE=2 SV=3	532.0	[0..1]	[322..1]
gi\|114107861, gi... - gi\|148229593\|ref\|NP_001090349.1\| sideroflexin 1 (35.5 kD) (XM278) [Xenopus laevis], gi\|114107861\|gb\|...	529.0	[0..1]	[322..1]
gi\|62663266, gi\|... - gi\|62663266\|ref\|XP_573990.1\| PREDICTED: sideroflexin 1 (predicted) [Rattus norvegicus], gi\|58865994\|...	528.0	[0..1]	[322..1]
SFXN1_MOUSE - Sideroflexin-1 OS=Mus musculus GN=Sfxn1 PE=1 SV=3	527.0	[0..1]	[322..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGELPPNIN IKEPRWDQST FIGRANHFFT VTDPRNILLT NEQLESARKI VHDYRQGIVP  60
   61 PGLTENELWR AKYIYDSAFH PDTGEKMILI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRMSAQVPMN MTITGCMMTF YRTTPAVLFW QWINQSFNAV VNYTNRSGDA PLTVNELGTA  60
   61 YVSATTGAVA TALGLNALTK HVSPLIGRFV PFAAVAAANC INIPLMRQRE LKVGIPVTDE 120
  121 NGNRLGESAN AAKQAITQVV VSRILMAAPG MAIPPFIMNT LEKKAFLKRF PWMSAPIQVG 180
  181 LVGFCLVFAT PLCCALFPQK SSMSVTSLEA ELQAKIQESH PELRRVYFNK GL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits