YRC Public Data Repository - Protein Structure Prediction

Protein:	PRM2_RAT
Organism:	Rattus norvegicus
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM2_RAT.

Description	E-value	Query Range	Subject Range
gi\|1359529 - gi\|1359529\|emb\|CAA87062.1\| protamine 2 [Rattus norvegicus]	56.0	[0..1]	[62..1]
gi\|227825913 - gi\|227825913\|gb\|ACP41657.1\| protamine 2 [Mus musculus castaneus] gi\|227825911 - gi\|227825911\|gb\|ACP41656.1\| protamine 2 [Mus musculus bactrianus] gi\|227825925 - gi\|227825925\|gb\|ACP41663.1\| protamine 2 [Mus macedonicus] gi\|227825917 - gi\|227825917\|gb\|ACP41659.1\| protamine 2 [Mus musculus domesticus] gi\|227825909 - gi\|227825909\|gb\|ACP41655.1\| protamine 2 [Mus musculus musculus] PRM2_MOUSE - Protamine-2 OS=Mus musculus GN=Prm2 PE=1 SV=1	52.0	[0..1]	[62..1]
PRM2_RATFU - Protamine-2 OS=Rattus fuscipes GN=Prm2 PE=2 SV=1	51.0	[0..1]	[41..1]
PRM2_RATTU - Protamine-2 OS=Rattus tunneyi GN=Prm2 PE=2 SV=1	50.0	[0..1]	[62..1]
gi\|15430640, gi\|... - gi\|15430640\|gb\|AAK98523.1\|AF268204_1 protamine 2 [Mesocricetus auratus], gi\|15430638\|gb\|AAK98522.1\|A...	49.0	[0..1]	[41..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRYRMRSPS EGQHQGPGQD HEREEQGQGQ ELSPERVEDY GRTERGHHHR HRRCKRLHRI  60
   61 HKRRRSCRRR RRHSCRHRRR HRRGCRRSRR RRSCRCRKCR WHYY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.481486
Match:	PF00841.10
Description:	No description for PF00841.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits