YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254912306, gi...
Organism:	Listeria monocytogenes J2818
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254912306, gi....

Description	E-value	Query Range	Subject Range
gi\|196253698, gi... - gi\|196253698\|ref\|ZP_03152312.1\| anthranilate phosphoribosyltransferase [Clostridium thermocellum DSM... TRPD_CLOTH - Anthranilate phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / N...	419.0	[0..1]	[338..2]
TRPD_BRADU - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 1362... TRPD_BRAJA - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=trpD PE=3 SV=1	387.0	[0..1]	[334..4]
TRPD_LISIN - Anthranilate phosphoribosyltransferase OS=Listeria innocua GN=trpD PE=3 SV=1 TRPD_LISIN - Anthranilate phosphoribosyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=trpD PE...	387.0	[0..1]	[339..1]
gi\|47017183, gi\|... - gi\|47094443\|ref\|ZP_00232125.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes str. 4... gi\|153202547, gi... - gi\|254931570\|ref\|ZP_05264929.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes HPB22... gi\|254852253 - gi\|254852253\|ref\|ZP_05241601.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes FSL R... gi\|254824309 - gi\|254824309\|ref\|ZP_05229310.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes FSL J... gi\|255520870 - gi\|255520870\|ref\|ZP_05388107.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes FSL J... gi\|254880270 - gi\|254880270\|ref\|ZP_05252980.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes FSL J... TRPD_LISMF - Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpD ... TRPD_LISMC - Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=t... TRPD_LISMC - Anthranilate phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=t... gi\|153167213, gi... - gi\|153167213\|ref\|ZP_01927494.1\| anthranilate phosphoribosyltransferase [Listeria monocytogenes FSL N...	385.0	[0..1]	[339..1]
gi\|147920704, gi... - gi\|147920704\|ref\|YP_685492.1\| anthranilate synthase, component II (including glutamine amidotransfer...	384.0	[0..1]	[334..190]
TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 266... TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii GN=trpD PE=3 SV=1	384.0	[0..1]	[335..2]
TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans GN=trpD PE=3 SV=1 TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 /...	382.0	[0..1]	[339..4]
TRPD_GEOMG - Anthranilate phosphoribosyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM...	382.0	[0..1]	[335..2]
gi\|95930492, gi\|... - gi\|95930492\|ref\|ZP_01313228.1\| anthranilate phosphoribosyltransferase [Desulfuromonas acetoxidans DS...	381.0	[0..1]	[335..2]
TRPD_METBF - Anthranilate phosphoribosyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=trpD P...	380.0	[0..1]	[339..1]

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Predicted Domain #1

Region A:
Residues: [1-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEILLQKVYD QENLSKEEMN IIATEIFEGR LSKTKMAAFL MALKVKGETA EEMAGIAQAM  60
   61 QQVAIQVAFP AGTAMDNCGT GGDKSNSFNI STTSAFVLAA AGIPVAKHGN RSISSRSGSA 120
  121 DVCQELGIDI NLRPEDMTYL LEKVGIAFLF APHVHPNMKY VMDVRKELGT PTIFNLIGPL 180
  181 TNPVHLETQL MGIYRRDLLE QTAEVLGQLG RKRAVVLNGA GFMDEASLAG ENHYALYENG 240
  241 EVHLYTLRPE DVGLTSYPLE AITGGDAKEN AAILRSVLEG EPGAYLDTVL LNAGFGLFAN 300
  301 GKVETVQEGV DLAKDLISSG LAKQKLADLI TYQKEVLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.0
Match:	1kgzA
Description:	Anthranilate phosphoribosyltransferase (TrpD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
anthranilate phosphoribosyltransferase activity	4.81240054558791	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.10935430322097	bayes_pls_golite062009
catalytic activity	1.99182579317454	bayes_pls_golite062009
transferase activity	1.94624792134779	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.10712828233974	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: