YRC Public Data Repository - Protein Structure Prediction

Protein:	RAP1A_RAT
Organism:	Rattus norvegicus
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAP1A_RAT.

Description	E-value	Query Range	Subject Range
gi\|94389706 - gi\|94389706\|ref\|XP_990136.1\| PREDICTED: similar to RAS related protein 1b [Mus musculus]	5.0E-51	[1..184]	[235..418]
RAP1B_XENLA - Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1 RAP1B_XENTR - Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1	3.0E-49	[1..184]	[1..184]
gi\|41054748, gi\|... - gi\|41054748\|ref\|NP_955827.1\| RAS related protein 1b [Danio rerio], gi\|27882359\|gb\|AAH44548.1\| RAS re...	4.0E-49	[1..184]	[1..184]
RAP1B_CYPCA - Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1	4.0E-49	[1..184]	[1..184]
RAC1_CANLF - Ras-related C3 botulinum toxin substrate 1 OS=Canis lupus familiaris GN=RAC1 PE=2 SV=1 RAC1 - ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) gi\|90085276 - gi\|90085276\|dbj\|BAE91379.1\| unnamed protein product [Macaca fascicularis] gi\|117616674, gi... - gi\|208967264\|dbj\|BAG73646.1\| ras-related C3 botulinum toxin substrate 1 [synthetic construct], gi\|19... gi\|149636782 - gi\|149636782\|ref\|XP_001506443.1\| PREDICTED: similar to Chain B, Activated Rac1 Bound To Its Effector... RAC1_MOUSE - Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1 RAC1_BOVIN - Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1 gi\|3184510, gi\|4... - gi\|45384330\|ref\|NP_990348.1\| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP bindi... RAC1_RAT - Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1 gi\|89272838, gi\|... - gi\|89272838\|emb\|CAJ83626.1\| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP bindin... ENSPTRT00000034946 - null gi\|238566849, gi... - gi\|240849265\|ref\|NP_001155328.1\| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP b...	5.0E-49	[1..184]	[1..192]
gi\|5738220, gi\|8... - gi\|80476985\|gb\|AAI08885.1\| RAC1 protein [Xenopus laevis], gi\|5738220\|gb\|AAD50299.1\|AF174644_1 rac GT...	7.0E-49	[1..184]	[1..192]
gi\|103719 - gi\|103719\|pir\|\|F38625 GTP-binding protein o-Krev - electric ray (Discopyge ommata)	7.0E-49	[1..184]	[1..184]

Back

Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREYKLVVLG SGGVGKSALT VQFVQGIFVE KYDPTIEDSY RKQVEVDCQQ CMLEILDTAG  60
   61 TEQFTAMRDL YMKNGQGFAL VYSITAQSTF NDLQDLREQI LRVKDTEDVP MILVGNKCDL 120
  121 EDERVVGKEQ GQNLARQWCN CAFLESSAKS KINVNEIFYD LVRQINRKTP VEKKKPKKKS 180
  181 CLLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1guaA
Description:	Rap1A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits