YRC Public Data Repository - Protein Structure Prediction

Protein:	HIG1A_MOUSE
Organism:	Mus musculus
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIG1A_MOUSE.

Description	E-value	Query Range	Subject Range
HIG1A_PONPY - HIG1 domain family member 1A - Pongo pygmaeus (Orangutan) HIG1A_PONAB - HIG1 domain family member 1A, mitochondrial OS=Pongo abelii GN=HIGD1A PE=3 SV=1 ENSPTRT00000027670 - null HIGD1A - HIG1 hypoxia inducible domain family, member 1A	151.0	[0..1]	[93..1]
HIG1A_RAT - HIG1 domain family member 1A, mitochondrial OS=Rattus norvegicus GN=Higd1a PE=1 SV=2	151.0	[0..1]	[93..1]
gi\|109041237, gi... - gi\|109041240\|ref\|XP_001115232.1\| PREDICTED: HIG1 domain family, member 1A isoform 3 [Macaca mulatta]...	150.0	[0..1]	[93..1]
gi\|73989865, gi\|... - gi\|73989865\|ref\|XP_861494.1\| PREDICTED: similar to hypoxia induced gene 1 isoform 2 [Canis familiari...	150.0	[0..1]	[93..1]
gi\|119916037, gi... - gi\|94534984\|gb\|AAI16169.1\| HIG1 domain family, member 1D [Bos taurus], gi\|119916037\|ref\|XP_001249479...	147.0	[0..1]	[93..1]
gi\|114595642 - gi\|114595642\|ref\|XP_001138606.1\| PREDICTED: similar to HSPC010 [Pan troglodytes]	135.0	[0..1]	[87..1]
gi\|148677178, gi... - gi\|19879246\|gb\|AAK21983.1\| unknown [Mus musculus], gi\|148677180\|gb\|EDL09127.1\| HIG1 domain family, m...	134.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNTDLSLS SYDEGQGSKF IRKAKETPFV PIGMAGFAAI VAYGLYKLKS RGNTKMSIHL  60
   61 IHMRVAAQGF VVGAMTLGMG YSMYQEFWAN PKPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.49485
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits