YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12833651, gi\|...
Organism:	Mus musculus
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12833651, gi|....

Description	E-value	Query Range	Subject Range
RS3A_MOUSE - 40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3 gi\|51980539 - gb\|AAH82142.1\| Unknown (protein for MGC:98352) [Xenopus laevis]	439.0	[0..1]	[264..1]
ENSCJAT000000295... - null, null, null, null gi\|149698161 - gi\|149698161\|ref\|XP_001501524.1\| PREDICTED: similar to ribosomal protein S3a [Equus caballus] gi\|90076792, gi\|... - gi\|90076792\|dbj\|BAE88076.1\| unnamed protein product [Macaca fascicularis], gi\|90075356\|dbj\|BAE87358.... tr\|A0A0A0MQ24\|A0... - 40S ribosomal protein S3a OS=Felis catus GN=RPS3A PE=3 SV=1 gi\|114596379, gi... - gi\|114596381\|ref\|XP_001153182.1\| PREDICTED: similar to v-fos transformation effector protein isoform... gi\|125991725 - gi\|125991725\|emb\|CAF32214.1\| Ribosomal protein S3Ae [Sus scrofa] RS3A_BOVIN - 40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3 gi\|123995293, gi... - gi\|208967332\|dbj\|BAG73680.1\| ribosomal protein S3A [synthetic construct], gi\|123995293\|gb\|ABM85248.1... RPS3A - ribosomal protein S3A gi\|73977919, gi\|... - gi\|73977921\|ref\|XP_867656.1\| PREDICTED: similar to ribosomal protein S3a isoform 13 [Canis familiari... ENSOCUP000000060... - pep:novel chromosome:oryCun2:X:88529355:88530149:1 gene:ENSOCUG00000023695 transcript:ENSOCUT0000002...	439.0	[0..1]	[264..1]
RS3A_MACFA - 40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3	439.0	[0..1]	[264..1]
RS3A_RAT - 40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2 tr\|G3HKG8\|G3HKG8... - 40S ribosomal protein S3a OS=Cricetulus griseus GN=Rps3a PE=3 SV=1	439.0	[0..1]	[264..1]
gi\|76703555, gi\|... - gi\|76703557\|ref\|XP_876951.1\| PREDICTED: similar to ribosomal protein S3a isoform 4 [Bos taurus], gi\|...	438.0	[0..1]	[264..1]
gi\|57106406 - gi\|57106406\|ref\|XP_534831.1\| PREDICTED: similar to ribosomal protein S3a isoform 1 [Canis familiaris...	436.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKNKRLT KGGKKGAKKK VVDPFSKKDW YDVKAPAMFN IRNIGKTLVT RTQGTKIASD  60
   61 GLKGRVFEVS LADLQND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVAFRKFELI TEDVQGKNCL TNFHGMDLTR DKMCSMVKKW QTMIEAHVDV KTTDGYLLRL  60
   61 FCVGFTKKRN NQIRKTSYAQ HQQVRQIRKK MMEIMTREVQ TNDLKEVVNK LIPDSIGKDI 120
  121 EKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.900	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.822	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.799	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.795	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.762	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.707	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.628	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.605	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.593	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.578	N/A	N/A	d.109.1	Actin depolymerizing proteins

Predicted Domain #3

Region A:
Residues: [201-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CQSIYPLHDV FVRKVKMLKK PKFELGKLME LHGEGGSSGK AAGDETGAKV ERADGYEPPV  60
   61 QESV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.498	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.492	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.452	N/A	N/A	a.5.7	4-hydroxy-2-oxovalerate aldolase DmpG, communication domain
View	Download	0.412	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.395	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.322	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits