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View Structure Prediction Details

Protein: VAMP7_MOUSE
Organism: Mus musculus
Length: 220 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAMP7_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|74009232 - gi|74009232|ref|XP_855489.1| PREDICTED: similar to Synaptobrevin-like protein 1 [Canis familiaris]
 248.0 [0..1] [220..112]
VAMP7_RAT - Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1
 242.0 [0..1] [220..1]
gi|113547541, gi... - gi|215697298|dbj|BAG91292.1| unnamed protein product [Oryza sativa Japonica Group], gi|115450939|ref...
gi|125542540 - gi|125542540|gb|EAY88679.1| hypothetical protein OsI_10154 [Oryza sativa Indica Group]
 242.0 [0..2] [214..8]
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2
 242.0 [0..2] [215..5]
gi|62897147 - gi|62897147|dbj|BAD96514.1| synaptobrevin-like 1 variant [Homo sapiens]
 239.0 [0..1] [220..1]
SYBL1_PONPY - Synaptobrevin-like protein 1 - Pongo pygmaeus (Orangutan)
VAMP7_PONAB - Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3
 238.0 [0..1] [220..1]
VAMP7_BOVIN - Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1
 238.0 [0..1] [220..1]

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Predicted Domain #1
Region A:
Residues: [1-118] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILFAVVAR GTTILAKHAW CGGNFLEVTE QILAKIPSEN NKLTYSHGNY LFHYICQDRI  60
   61 VYLCITDDDF ERSRAFSFLN EVKKRFQTTY GSRAQTALPY AMNSEFSSVL AAQLKHHS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 2dmwA
Description: No description for 2dmwA was found.

Predicted Domain #2
Region A:
Residues: [119-220] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENKSLDKVME TQAQVDELKG IMVRNIDLVA QRGERLELLI DKTENLVDSS VTFKTTSRNL  60
   61 ARAMCMKNIK LTIIIIIVSI VFIYIIVSLL CGGFTWPNCV KK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.522879
Match: 1sfcA
Description: Synaptobrevin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle