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View Structure Prediction Details

Protein: GALA_MOUSE
Organism: Mus musculus
Length: 124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GALA_MOUSE.

Description E-value Query
Range
Subject
Range
GALA_RAT - Galanin peptides OS=Rattus norvegicus GN=Gal PE=1 SV=1
209.0 [0..1] [124..1]
GALA_COTJA - Galanin peptides OS=Coturnix coturnix japonica GN=GAL PE=3 SV=2
193.0 [0..1] [111..1]
gi|29122965 - gi|29122965|gb|AAO65775.1| preprogalanin 1A [Carassius auratus]
184.0 [0..1] [123..1]
gi|190412 - gi|190412|gb|AAA60178.1| pro-galanin
182.0 [0..17] [124..1]
gi|114638960 - gi|114638960|ref|XP_001173776.1| PREDICTED: galanin [Pan troglodytes]
179.0 [0..1] [124..1]
gi|60654465 - gi|60654465|gb|AAX29923.1| galanin [synthetic construct]
177.0 [0..1] [124..1]
gi|423438, gi|312339 - pir||S34301 galanin - mouse, gi|312339|emb|CAA80610.1| galanin [Mus musculus]
176.0 [0..26] [124..1]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGSVILLG WLLLVVTLSA TLGLGMPAKE KRGWTLNSAG YLLGPHAIDN HRSFSDKHGL  60
   61 TGKRELQLEV EERRPGSVDV PLPESNIVRT IMEFLSFLHL KEAGALDSLP GIPLATSSED 120
  121 LEKS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.823909
Match: PF06540.2
Description: No description for PF06540.2 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle