YRC Public Data Repository - Protein Structure Prediction

Protein:	VTI1A_MOUSE
Organism:	Mus musculus
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTI1A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73999473 - gi\|73999473\|ref\|XP_544116.2\| PREDICTED: similar to vesicle transport through interaction with t-SNAR...	177.0	[0..2]	[215..176]
VTI13_ARATH - Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1	172.0	[0..1]	[216..1]
gi\|92883016 - gi\|92883016\|gb\|ABE86759.1\| Vesicle transport v-SNARE [Medicago truncatula]	168.0	[0..1]	[214..1]
gi\|9719420, gi\|1... - gi\|9719420\|gb\|AAF97790.1\|AF262221_1 SNARE Vti1a protein [Rattus norvegicus], gi\|149040434\|gb\|EDL9447...	164.0	[0..1]	[217..1]
gi\|46138669, gi\|... - gi\|46138669\|ref\|XP_391025.1\| hypothetical protein FG10849.1 [Gibberella zeae PH-1], gi\|42551459\|gb\|E...	164.0	[0..2]	[189..11]
gi\|123243967, gi... - gi\|123266022\|emb\|CAM22437.1\| vesicle transport through interaction with t-SNAREs homolog 1A (yeast) ... gi\|114632865 - gi\|114632865\|ref\|XP_001147118.1\| PREDICTED: similar to SNARE Vti1a protein isoform 5 [Pan troglodyte...	161.0	[0..1]	[217..1]
gi\|148669786, gi... - gi\|58475959\|gb\|AAH89321.1\| Vti1a protein [Mus musculus], gi\|148669786\|gb\|EDL01733.1\| vesicle transpo...	158.0	[0..1]	[217..1]
gi\|114632869 - gi\|114632869\|ref\|XP_001146992.1\| PREDICTED: SNARE Vti1a-beta protein isoform 3 [Pan troglodytes]	156.0	[0..1]	[188..1]
gi\|50760647 - gi\|50760647\|ref\|XP_418096.1\| PREDICTED: similar to Wnt-9b protein precursor (Wnt-15) (Wnt-14b) [Gall...	155.0	[0..8]	[214..495]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDFEGYEQ DFAVLTAEIT SKIARVPRLP PDEKKQMVAN VEKQLEEARE LLEQMDLEVR  60
   61 EIPPQSRGMY SNRMRSYKQE MGKLETDFKR SRIAYSDEVR NE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.30103
Match:	1vcsA
Description:	Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [103-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLGDAGNSSE NQRAHLLDNT ERLERSSRRL EAGYQIAVET EQIGQEMLEN LSHDREKIQR  60
   61 ARDRLRDADA NLGKSSRILT GMLRRIIQNR ILLVILGIIV VIAILTAIAF FVKGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2npsC
Description:	No description for 2npsC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits