YRC Public Data Repository - Protein Structure Prediction

Protein:	CRUM3_MOUSE
Organism:	Mus musculus
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRUM3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|49091930, gi\|... - gi\|67525663\|ref\|XP_660893.1\| hypothetical protein AN3289.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	121.0	[0..16]	[112..107]
gi\|158288575, gi... - gi\|58380285\|ref\|XP_310433.2\| ENSANGP00000017849 [Anopheles gambiae str. PEST], gi\|55244006\|gb\|EAA060...	107.0	[0..31]	[113..1953]
gi\|149028144, gi... - gi\|71043838\|ref\|NP_001020832.1\| crumbs homolog 3 [Rattus norvegicus], gi\|66911440\|gb\|AAH97382.1\| Cru...	106.0	[0..1]	[113..1]
gi\|108874849, gi... - gi\|157120681\|ref\|XP_001659720.1\| crumbs [Aedes aegypti], gi\|108874849\|gb\|EAT39074.1\| crumbs [Aedes a...	105.0	[0..31]	[113..557]
crb-1 - EGF-like repeats status:Partially_confirmed UniProt:Q19350 protein_id:AAC69012.1	104.0	[0..30]	[113..1640]
gi\|39596035, gi\|... - gi\|39596035\|emb\|CAE69671.1\| Hypothetical protein CBG15921 [Caenorhabditis briggsae], gi\|187026828\|em... gi\|157767766 - gi\|157767766\|ref\|XP_001667363.1\| Hypothetical protein CBG15921 [Caenorhabditis briggsae AF16]	104.0	[0..30]	[113..1639]
gi\|73960632 - gi\|73960632\|ref\|XP_547379.2\| PREDICTED: similar to crumbs homolog 1 isoform II precursor [Canis fami...	100.0	[0..30]	[113..1385]
gi\|165993307, gi... - gi\|83763471\|gb\|ABC46645.1\| oko meduzy [Danio rerio], gi\|165993307\|emb\|CAP71968.1\| crb2 [Danio rerio]...	98.0	[0..30]	[113..1383]
gi\|110755551 - gi\|110755551\|ref\|XP_001121416.1\| PREDICTED: similar to crumbs CG6383-PA [Apis mellifera]	98.0	[0..32]	[113..2062]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPGLGVLL AFGLPMLPSG WSLTAPDPFT NSTTQPPGDE SNGGLSSGAI VAITVVFSIL  60
   61 GVLLIAVGLF LLMRKLREKR QTEGTYRPSS EEQVGARAPP PPNLKLPPEE RLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits