YRC Public Data Repository - Protein Structure Prediction

Protein:	CART_MOUSE
Organism:	Mus musculus
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CART_MOUSE.

Description	E-value	Query Range	Subject Range
CART_RAT - Cocaine- and amphetamine-regulated transcript protein OS=Rattus norvegicus GN=Cartpt PE=1 SV=1	191.0	[0..1]	[129..1]
gi\|17644106 - gi\|17644106\|gb\|AAK57738.1\| cocaine and amphetamine regulated transcript type I protein [Carassius au...	190.0	[0..1]	[129..1]
gi\|68364222 - gi\|68364222\|ref\|XP_685429.1\| PREDICTED: similar to cocaine and amphetamine regulated transcript prot...	182.0	[0..1]	[129..1]
gi\|114599766 - gi\|114599766\|ref\|XP_001155069.1\| PREDICTED: cocaine- and amphetamine-regulated transcript [Pan trogl...	170.0	[0..1]	[129..1]
gi\|74149156 - gi\|74149156\|dbj\|BAE22382.1\| unnamed protein product [Mus musculus]	170.0	[0..1]	[129..1]
CARTPT - CART prepropeptide gi\|61358568, gi\|... - gi\|61358568\|gb\|AAX41588.1\| cocaine- and amphetamine-regulated transcript [synthetic construct], gi\|6...	170.0	[0..1]	[129..1]
gi\|61368660, gi\|... - gi\|61368660\|gb\|AAX43217.1\| cocaine- and amphetamine-regulated transcript [synthetic construct], gi\|6...	169.0	[0..1]	[129..1]
gi\|109077541 - gi\|109077541\|ref\|XP_001096906.1\| PREDICTED: cocaine- and amphetamine-regulated transcript [Macaca mu...	168.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSRLRLLP LLGAALLLLL PLLGARAQED AELQPRALDI YSAVDDASHE KELPRRQLRA  60
   61 PGAMLQIEAL QEVLKKLKSK RIPIYEKKYG QVPMCDAGEQ CAVRKGARIG KLCDCPRGTS 120
  121 CNSFLLKCL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.958607
Match:	PF06373.2
Description:	No description for PF06373.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits