YRC Public Data Repository - Protein Structure Prediction

Protein:	RAMP1_MOUSE
Organism:	Mus musculus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAMP1_MOUSE.

Description	E-value	Query Range	Subject Range
RAMP1_RAT - Receptor activity-modifying protein 1 OS=Rattus norvegicus GN=Ramp1 PE=2 SV=1	252.0	[0..1]	[148..1]
gi\|114584083 - gi\|114584083\|ref\|XP_516183.2\| PREDICTED: receptor activity-modifying protein 1 isoform 3 [Pan troglo...	237.0	[0..1]	[148..1]
gi\|60831821 - gi\|60831821\|gb\|AAX36985.1\| receptor activity modifying protein 1 [synthetic construct]	236.0	[0..1]	[148..1]
HGNC:9843\|MIM:60... - (G protein-coupled) activity modifying protein 1, (G protein-coupled) activity modifying protein 1 gi\|123996831, gi... - gi\|60822534\|gb\|AAX36612.1\| receptor activity modifying protein 1 [synthetic construct], gi\|123996831... RAMP1 - receptor (G protein-coupled) activity modifying protein 1	236.0	[0..1]	[148..1]
RAMP1_PIG - Receptor activity-modifying protein 1 OS=Sus scrofa GN=RAMP1 PE=2 SV=1	235.0	[0..1]	[148..1]
RAMP1_CAVPO - Receptor activity-modifying protein 1 OS=Cavia porcellus GN=RAMP1 PE=2 SV=1	228.0	[0..1]	[148..1]
gi\|73994206 - gi\|73994206\|ref\|XP_848857.1\| PREDICTED: similar to Receptor activity-modifying protein 1 precursor [...	206.0	[0..15]	[148..107]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGLRGLPR CGLWLLLAHH LFMVTACRDP DYGTLIQELC LSRFKENMET IGKTLWCDWG  60
   61 KTIQSYGELT YCTKHVAHTI GCFWPNPEVD RFFIAVHHRY FSKCPISGRA LRDPPNSILC 120
  121 PFIALPITVT LLMTALVVWR SKRTEGIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.769551
Match:	PF04901.4
Description:	No description for PF04901.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.909	N/A	N/A	a.112.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits