YRC Public Data Repository - Protein Structure Prediction

Protein:	STAR6_MOUSE
Organism:	Mus musculus
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STAR6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114619695, gi... - gi\|114619695\|ref\|XP_001170375.1\| PREDICTED: steroidogenic acute regulator isoform 6 [Pan troglodytes...	211.0	[0..1]	[212..73]
gi\|61370498, gi\|... - gi\|61370505\|gb\|AAX43506.1\| steroidogenic acute regulator [synthetic construct], gi\|61370498\|gb\|AAX43...	211.0	[0..1]	[212..73]
STAR - steroidogenic acute regulatory protein gi\|123981806 - gi\|123981806\|gb\|ABM82732.1\| steroidogenic acute regulator [synthetic construct]	211.0	[0..1]	[212..73]
gi\|109086164 - gi\|109086164\|ref\|XP_001090472.1\| PREDICTED: similar to steroidogenic acute regulator isoform 1 isofo...	208.0	[0..1]	[212..73]
gi\|1809329 - gi\|1809329\|gb\|AAB41674.1\| steroidogenic acute regulatory protein [Rattus norvegicus]	206.0	[0..1]	[211..150]
STAR_HORSE - Steroidogenic acute regulatory protein, mitochondrial OS=Equus caballus GN=STAR PE=2 SV=1	206.0	[0..1]	[212..73]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKAIAQQT AEQVLAYNQD LSGWKLIKSS KKVTVSSKTS RIFHGNLYRV EGIIPESAAH  60
   61 LSDFLFKHDH RVSWDKSLKG FNVIHKIDSD TLICHTITQS FAMGSISPRD FIDLVHIKHY 120
  121 ERNVDIISTK SVDFPGYAPT STYIRGFNHP SGYVCSPLKE NPAYSKLVIF VQTEMKGKLP 180
  181 ASVIEKSMPS NLVSFLLNVK DGVKTYRIPP IRARHSSHSS VHKKKEGHSA IKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2r55A
Description:	No description for 2r55A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits