YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TM38B_MOUSE
Organism: Mus musculus
Length: 292 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TM38B_MOUSE.

Description E-value Query
Range
Subject
Range
gi|74139698 - gi|74139698|dbj|BAE31700.1| unnamed protein product [Mus musculus]
472.0 [0..1] [292..1]
TM38B_RAT - Trimeric intracellular cation channel type B OS=Rattus norvegicus GN=Tmem38b PE=2 SV=1
467.0 [0..1] [292..1]
gi|48146633 - gi|48146633|emb|CAG33539.1| FLJ10493 [Homo sapiens]
445.0 [0..1] [292..1]
gi|114626008 - gi|114626008|ref|XP_001139453.1| PREDICTED: transmembrane protein 38B isoform 3 [Pan troglodytes]
443.0 [0..1] [292..1]
TM38B_BOVIN - Trimeric intracellular cation channel type B OS=Bos taurus GN=TMEM38B PE=2 SV=1
420.0 [0..1] [282..1]

Back

Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYPWDDLTL AFSRTSMFPF FDIAHYLVSV MALKQRPGAV AAAWNNPLAS WLSAMLHCFG  60
   61 GGILSCMLLA ESPLKFLTNH TNILLASSIW YIVFFCPRDL VSQGYSYQPI QFLAAGMKEV 120
  121 TRTWKIVGGV SDANSYYRNA WIVMIVVGWA RGAGGAVVTA CEQLLKGDWK PEGDEWLKMS 180
  181 FPCKITLLGS IMFTFQHTRH LAISKHDLMF LYTIFLVTIK VTMMMTKDTA VTLTPFEDTL 240
  241 TRMLFGRRQQ QQFSSSEKKT EVKPSSNGSA SSASKRGAEP SGGAKRHAKK ED

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 155.823909
Match: PF05197.4
Description: No description for PF05197.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle