YRC Public Data Repository - Protein Structure Prediction

Protein:	RM34_MOUSE
Organism:	Mus musculus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM34_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|55741479 - ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus] gi\|149036130, gi... - gi\|55741479\|ref\|NP_001006966.1\| mitochondrial ribosomal protein L34 [Rattus norvegicus], gi\|54261631...	122.0	[0..1]	[92..1]
MRPL34 - mitochondrial ribosomal protein L34 ENSPTRT00000056231 - null	120.0	[0..1]	[92..1]
RM34_MACFA - 39S ribosomal protein L34, mitochondrial OS=Macaca fascicularis GN=MRPL34 PE=3 SV=1	119.0	[0..1]	[92..1]
gi\|109123850, gi... - gi\|109123850\|ref\|XP_001113551.1\| PREDICTED: similar to mitochondrial ribosomal protein L34 isoform 3...	117.0	[0..1]	[92..1]
gi\|114675984 - gi\|114675984\|ref\|XP_001161111.1\| PREDICTED: hypothetical protein [Pan troglodytes]	86.0	[0..22]	[89..51]
gi\|73986225 - gi\|73986225\|ref\|XP_852645.1\| PREDICTED: similar to mitochondrial ribosomal protein L34 [Canis famili...	82.0	[0..1]	[92..1]
gi\|45201176, gi\|... - gi\|45201176\|ref\|NP_986746.1\| AGR081Cp [Ashbya gossypii ATCC 10895], gi\|44985959\|gb\|AAS54570.1\| AGR08... gi\|44985959 - gi\|44985959\|gb\|AAS54570.1\| AGR081Cp [Ashbya gossypii ATCC 10895]	77.0	[0..38]	[92..76]
gi\|21325872 - gi\|21325872\|dbj\|BAC00493.1\| Ribosomal protein L34 [Corynebacterium glutamicum ATCC 13032]	76.0	[0..20]	[91..42]
gi\|68355922 - gi\|68355922\|ref\|XP_691339.1\| PREDICTED: hypothetical protein [Danio rerio]	76.0	[0..37]	[92..66]
gi\|50807217 - gi\|50807217\|ref\|XP_424552.1\| PREDICTED: hypothetical protein [Gallus gallus]	76.0	[0..31]	[92..57]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLARCFGC QACRSVALLS GRYLQSRVWM GLPDSWPLLS LQQARGRARG NEYQPSNIKR  60
   61 KHKHGWVRRL STPAGVQVIL RRMLKGRKSL SH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits