YRC Public Data Repository - Protein Structure Prediction

Protein:	SYJ2B_MOUSE
Organism:	Mus musculus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYJ2B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12842000 - gi\|12842000\|dbj\|BAB25432.1\| unnamed protein product [Mus musculus]	152.0	[0..1]	[145..1]
gi\|114653718 - gi\|114653718\|ref\|XP_001145530.1\| PREDICTED: synaptojanin 2 binding protein isoform 4 [Pan troglodyte...	151.0	[0..1]	[145..1]
SYNJ2BP - synaptojanin 2 binding protein	151.0	[0..1]	[145..1]
SYJ2B_BOVIN - Synaptojanin-2-binding protein OS=Bos taurus GN=SYNJ2BP PE=2 SV=1	150.0	[0..1]	[145..1]
gi\|57090687 - gi\|57090687\|ref\|XP_547879.1\| PREDICTED: similar to Synaptojanin 2 binding protein (Mitochondrial out...	147.0	[0..1]	[145..1]
gi\|109084124 - gi\|109084124\|ref\|XP_001111113.1\| PREDICTED: synaptojanin 2 binding protein isoform 3 [Macaca mulatta... CCDS9803.1_1 - null	145.0	[0..1]	[145..1]
SYJ2B_RAT - Synaptojanin-2-binding protein OS=Rattus norvegicus GN=Synj2bp PE=1 SV=2	144.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGRVDYLVT EEEINLTRGP SGLGFNIVGG TDQQYVSNDS GIYVSRIKED GAAAQDGRLQ  60
   61 EGDKILSVNG QDLKNLLHQD AVDLFRNAGC AVSLRVQHRL PVQNGPIVHR GEGEPSGVPV 120
  121 AMVLLPVFAL TMVAVWAFVR YRKQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2enoA
Description:	No description for 2enoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits