YRC Public Data Repository - Protein Structure Prediction

Protein:	IPI:IPI00856171....
Organism:	Mus musculus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPI:IPI00856171.....

Description	E-value	Query Range	Subject Range
gi\|50755565, gi\|... - gi\|50755565\|ref\|XP_414798.1\| PREDICTED: similar to BUD31 homolog (yeast) isoform 4 [Gallus gallus], ... gi\|197127500, gi... - gi\|197127501\|gb\|ACH43999.1\| putative maternal G10 transcript variant 1 [Taeniopygia guttata], gi\|197...	1.0E-72	[1..144]	[1..144]
gi\|60810095 - gi\|60810095\|gb\|AAX36103.1\| maternal G10 transcript [synthetic construct]	1.0E-72	[1..144]	[1..144]
BUD31_XENLA - Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1	3.0E-72	[1..144]	[1..144]
gi\|49618921, gi\|... - gi\|51467966\|ref\|NP_001003860.1\| maternal G10 transcript [Danio rerio], gi\|49618921\|gb\|AAT68045.1\| G1...	4.0E-72	[1..144]	[1..144]
gi\|3064070, gi\|1... - gi\|3064070\|gb\|AAC14190.1\| G10 protein homolog [Rattus norvegicus], gi\|16758328\|ref\|NP_446008.1\| BUD3...	6.0E-72	[1..144]	[1..144]
gi\|229292493, gi... - gi\|229292493\|gb\|EEN63157.1\| hypothetical protein BRAFLDRAFT_113775 [Branchiostoma floridae], gi\|2194... BUD31_BRABE - Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1	6.0E-72	[1..144]	[1..144]
gi\|72133045, gi\|... - gi\|72133045\|ref\|XP_795914.1\| PREDICTED: similar to G10 protein [Strongylocentrotus purpuratus], gi\|1...	3.0E-70	[1..144]	[1..144]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVKRSRKA PPDGWELIEP TLDELDQKMR EAETEPHEGK RKVESLWPIF RIHHQKTRYI  60
   61 FDLFYKRKAI SRELYEYCIK EGYADKNLIA KWKKQGYENL CCLRCIQTRD TNFGTNCICR 120
  121 VPKSKLEVGR IIECTHCGCR GCSG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	119.408935
Match:	PF01125.8
Description:	No description for PF01125.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits