YRC Public Data Repository - Protein Structure Prediction

Protein:	YD286_MOUSE
Organism:	Mus musculus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YD286_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|212288103, gi... - gi\|212288103\|sp\|A6NC05.2\|YD286_HUMAN RecName: Full=Glutaredoxin-like protein YDR286C homolog, gi\|119... gi\|114601454 - gi\|114601454\|ref\|XP_001158651.1\| PREDICTED: hypothetical protein LOC742209 isoform 2 [Pan troglodyte...	156.0	[0..1]	[110..1]
gi\|76660396 - gi\|76660396\|ref\|XP_871525.1\| PREDICTED: similar to CG9147-PB, isoform B [Bos taurus]	153.0	[0..1]	[110..36]
gi\|56966926, gi\|... - gi\|56966926\|pdb\|1WJK\|A Chain A, Solution Structure Of Hypothetical Protein C330018d20rik From Mus Mu...	112.0	[0..26]	[107..13]
gi\|29831280, gi\|... - gi\|29831280\|ref\|NP_825914.1\| redoxin [Streptomyces avermitilis MA-4680], gi\|29608395\|dbj\|BAC72449.1\|...	104.0	[0..20]	[106..10]
gi\|50761403 - gi\|50761403\|ref\|XP_424718.1\| PREDICTED: hypothetical protein [Gallus gallus]	103.0	[0..4]	[108..11]
gi\|21221752, gi\|... - gi\|5123666\|emb\|CAB45355.1\| putative redoxin [Streptomyces coelicolor A3(2)], gi\|21221752\|ref\|NP_6275... gi\|7481233 - pir\|\|T36269 probable redoxin - Streptomyces coelicolor	100.0	[0..19]	[106..4]
gi\|21646146, gi\|... - gi\|21673076\|ref\|NP_661141.1\| hypothetical protein CT0237 [Chlorobium tepidum TLS], gi\|21646146\|gb\|AA...	96.0	[0..29]	[105..2]
gi\|71368938, gi\|... - gi\|71368938\|ref\|ZP_00659415.1\| conserved hypothetical protein [Nocardioides sp. JS614], gi\|71155340\|...	96.0	[0..30]	[105..4]
gi\|88984864, gi\|... - gi\|88989383\|ref\|XP_948736.1\| PREDICTED: hypothetical protein isoform 5 [Homo sapiens], gi\|88984864\|r...	96.0	[0..1]	[59..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWFQGKSLQ IAKSSFGLLR NLSASNRALP VLTLFTKAPC PLCDEAKEVL QPYKDRFILQ  60
   61 EVDITLPENS TWYERYKFDI PVFHLNGQFL MMHRVNTSKL EKQLRKLEQQ VLATN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1wjkA
Description:	Solution structure of hypothetical protein C330018D20Rik from Mus musculus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: