YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12852787, gi|...
Organism: Mus musculus
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12852787, gi|....

Description E-value Query
Range
Subject
Range
SLX1_MOUSE - Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1
276.0 [0..1] [190..1]
SLX1_RAT - Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1
270.0 [0..1] [190..1]
gi|109128179 - gi|109128179|ref|XP_001109511.1| PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform...
239.0 [0..4] [190..7]
GIYD2, GIYD1 - GIY-YIG domain containing 2, GIY-YIG domain containing 1
237.0 [0..4] [190..7]
gi|73958514 - gi|73958514|ref|XP_849594.1| PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform 1 [...
225.0 [0..4] [190..7]
SLX1_BOVIN - Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1
217.0 [0..7] [190..3]
gi|28381101, gi|... - gi|28571506|ref|NP_649484.2| CG18271 [Drosophila melanogaster], gi|28381101|gb|AAF52110.2| CG18271 [...
208.0 [0..2] [190..25]
giyd-1 - status:Partially_confirmed UniProt:P91351 protein_id:AAB37804.1
195.0 [0..8] [190..170]

Back

Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHAARPGRF FGVYLLYCQN PRHRGRVYVG FTVNPARRVR QHNAGRKKGG AWRTSGRGPW  60
   61 DMVLIIHGFP SAVAALRFEW AWQHPQASRR LTHVGPRLRS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.154902
Match: 1zg2A
Description: Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [101-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAAFAFHLRV LAHMLRVPPW VRLPLTLRWL RPDFRHELCP APPAHMPIAF GPPPPQPLVP  60
   61 KRPAVSEADS ERQLDLGTKA RCSLCARLLQ VRAHRGGDLG LCPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle