YRC Public Data Repository - Protein Structure Prediction

Protein:	CDN2B_MOUSE
Organism:	Mus musculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDN2B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|28373837 - gi\|28373837\|pdb\|1N0R\|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensu...	164.0	[0..5]	[129..1]
gi\|115621182, gi... - gi\|115951148\|ref\|XP_001197526.1\| PREDICTED: similar to ankyrin 2,3/unc44 [Strongylocentrotus purpura...	162.0	[0..4]	[130..208]
gi\|66845005, gi\|... - gi\|70983704\|ref\|XP_747379.1\| NACHT and Ankyrin domain protein [Aspergillus fumigatus Af293], gi\|6684...	160.0	[0..2]	[130..534]
gi\|85701704, gi\|... - gi\|85701704\|ref\|NP_001028370.1\| ankyrin repeat domain 50 [Mus musculus], gi\|74194058\|dbj\|BAE36940.1\|...	160.0	[0..3]	[129..16]
gi\|76630331 - gi\|76630331\|ref\|XP_882153.1\| PREDICTED: similar to kinase D-interacting substance of 220 kDa isoform...	159.0	[0..1]	[130..66]
gi\|115433911, gi... - gi\|115433911\|ref\|XP_001217610.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	159.0	[0..4]	[130..1000]
gi\|11321435 - gi\|11321435\|gb\|AAG34167.1\| ankyrin repeat-rich membrane-spanning protein [Rattus norvegicus]	158.0	[0..1]	[130..66]
gi\|50744999 - gi\|50744999\|ref\|XP_419939.1\| PREDICTED: similar to KIAA1250 protein [Gallus gallus]	158.0	[0..1]	[130..274]
gi\|73979700 - gi\|73979700\|ref\|XP_855938.1\| PREDICTED: similar to kinase D-interacting substance of 220 kDa isoform...	158.0	[0..1]	[130..66]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGGSSDAGL ATAAARGQVE TVRQLLEAGA DPNALNRFGR RPIQVMMMGS AQVAELLLLH  60
   61 GAEPNCADPA TLTRPVHDAA REGFLDTLVV LHRAGARLDV CDAWGRLPVD LAEEQGHRDI 120
  121 ARYLHAATGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1d9sA
Description:	Tumor suppressor p15(ink4b)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits