YRC Public Data Repository - Protein Structure Prediction

Protein:	RCAS1_MOUSE
Organism:	Mus musculus
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCAS1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74197173 - gi\|74197173\|dbj\|BAE35132.1\| unnamed protein product [Mus musculus]	374.0	[0..1]	[213..1]
gi\|194215048 - gi\|194215048\|ref\|XP_001495272.2\| PREDICTED: similar to estrogen receptor binding site associated ant... gi\|112362135, gi... - gi\|118151122\|ref\|NP_001071483.1\| estrogen receptor binding site associated antigen 9 [Bos taurus], g...	374.0	[0..1]	[213..1]
RCAS1_CANLF - Receptor-binding cancer antigen expressed on SiSo cells OS=Canis lupus familiaris GN=EBAG9 PE=2 SV=1	373.0	[0..1]	[213..1]
gi\|55631112, gi\|... - gi\|55631112\|ref\|XP_519909.1\| PREDICTED: estrogen receptor binding site associated antigen 9 isoform ... EBAG9 - estrogen receptor binding site associated, antigen, 9 gi\|123995933, gi... - gi\|123995933\|gb\|ABM85568.1\| estrogen receptor binding site associated, antigen, 9 [synthetic constru...	373.0	[0..1]	[213..1]
RCAS1_RAT - Receptor-binding cancer antigen expressed on SiSo cells OS=Rattus norvegicus GN=Ebag9 PE=1 SV=1	366.0	[0..1]	[213..1]
gi\|114621362 - gi\|114621362\|ref\|XP_001136586.1\| PREDICTED: estrogen receptor binding site associated antigen 9 isof...	360.0	[0..1]	[213..1]
gi\|109087265 - gi\|109087265\|ref\|XP_001087769.1\| PREDICTED: similar to estrogen receptor binding site associated ant...	357.0	[0..1]	[213..1]

Back

Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITQFRLFK VCTCLATVFS FLKRLICRSG RGRKLSGDQI TLPTTVDYSS VPKQTDVEEW  60
   61 TSWDEDAPTS VKIEGGNGNV ATQQNSLEQL EPDYFKDMTP TIRKTQKIVI KKREPLNFGV 120
  121 PDGSTGFSSR LAATQDMPFI HQSSELGDLD TWQENSNAWE EEEDAAWQAE EVLRQQKIAD 180
  181 REKRAAEQQR KKMEKEAQRL MKKEQNKIGV KLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits