YRC Public Data Repository - Protein Structure Prediction

Protein:	TMEDA_MOUSE
Organism:	Mus musculus
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMEDA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149263967, gi... - gi\|82950179\|ref\|XP_916166.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|149263967\|ref\|XP_001...	270.0	[0..1]	[219..1]
TMEDA_MESAU - Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1	259.0	[0..1]	[219..1]
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	257.0	[0..1]	[218..1]
gi\|114653947 - gi\|114653947\|ref\|XP_510074.2\| PREDICTED: hypothetical protein [Pan troglodytes]	257.0	[0..1]	[219..153]
gi\|73963665 - gi\|73963665\|ref\|XP_854043.1\| PREDICTED: similar to transmembrane trafficking protein isoform 1 [Cani...	256.0	[0..1]	[219..1]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1	254.0	[0..1]	[219..1]
TMEDA_RAT - Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2	252.0	[0..1]	[219..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLFGPLSR PGPLPSAWLF LLLLGPSSVL GISFHLPVNS RKCLREEIHK DLLVTGAYEI  60
   61 TDQSGGAGGL RTHLKITDSA GHILYAKEDA TKGKFAFTTE DYDMFEVCFE SKGTGRIPDQ 120
  121 LVILDMKHGV EAKNYEEIAK VEKLKPLEVE LRRLEDLSES IVNDFAYMKK REEEMRDTNE 180
  181 STNTRVLYFS IFSMFCLIGL ATWQVFYLRR FFKAKKLIE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits