YRC Public Data Repository - Protein Structure Prediction

Protein:	ORML3_MOUSE
Organism:	Mus musculus
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORML3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109114982 - gi\|109114982\|ref\|XP_001087628.1\| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]	275.0	[0..1]	[153..183]
gi\|114145802, gi... - gi\|45478206\|gb\|AAS66274.1\| LRRGT00183 [Rattus norvegicus], gi\|114145802\|ref\|NP_001041362.1\| ORM1-lik...	257.0	[0..1]	[153..28]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1	248.0	[0..1]	[153..1]
ORML1_XENLA - ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1	246.0	[0..1]	[153..1]
ORMDL1 - ORM1-like 1 (S. cerevisiae) ORML1_PONAB - ORM1-like protein 1 OS=Pongo abelii GN=ORMDL1 PE=2 SV=1 gi\|114582244, gi... - gi\|114582250\|ref\|XP_001165741.1\| PREDICTED: ORM1-like 1 isoform 8 [Pan troglodytes], gi\|114582248\|re... ORML1_PONPY - ORM1-like protein 1 - Pongo pygmaeus (Orangutan) gi\|90079047 - gi\|90079047\|dbj\|BAE89203.1\| unnamed protein product [Macaca fascicularis] CCDS2301.1_1 - null gi\|109100358, gi... - gi\|109100360\|ref\|XP_001107686.1\| PREDICTED: ORM1-like 1 (S. cerevisiae) isoform 5 [Macaca mulatta], ...	245.0	[0..1]	[153..1]
ENSCJAT00000017378 - null ORML3_BOVIN - ORM1-like protein 3 OS=Bos taurus GN=ORMDL3 PE=2 SV=1 tr\|M3X8M7\|M3X8M7... - ORMDL sphingolipid biosynthesis regulator 3 OS=Felis catus GN=ORMDL3 PE=4 SV=1 gi\|149723870 - gi\|149723870\|ref\|XP_001500871.1\| PREDICTED: similar to ORM1-like 3 isoform 1 [Equus caballus] gi\|73966055, gi\|... - gi\|73966059\|ref\|XP_537651.2\| PREDICTED: similar to ORM1-like 3 isoform 1 [Canis familiaris], gi\|7396...	245.0	[0..1]	[153..1]
ORML1_BOVIN - ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 SV=1	244.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGTAHSEV NPNTRVMNSR GIWLSYVLAI GLLHVVLLSI PFVSVPVVWT LTNLIHNLGM  60
   61 YIFLHTVKGT PFETPDQGKA RLLTHWEQMD YGVQFTASRK FLTITPIVLY FLTSFYTKYD 120
  121 QVHFILNTVS LMTVLIPKLP QLHGVRIFGI NKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.79588
Match:	PF04061.5
Description:	No description for PF04061.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits