YRC Public Data Repository - Protein Structure Prediction

Protein:	DPH6_MOUSE
Organism:	Mus musculus
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPH6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109080616 - gi\|109080616\|ref\|XP_001089692.1\| PREDICTED: similar to ATP binding domain 4 [Macaca mulatta]	282.0	[0..1]	[266..96]
DPH6_RAT - Diphthine--ammonia ligase OS=Rattus norvegicus GN=Dph6 PE=2 SV=1	279.0	[0..1]	[267..1]
gi\|119612733, gi... - gi\|45219851\|gb\|AAH66652.1\| ATP binding domain 4 [Homo sapiens], gi\|21752980\|dbj\|BAC04266.1\| unnamed ...	271.0	[0..1]	[266..1]
DPH6_BOVIN - Diphthine--ammonia ligase OS=Bos taurus GN=DPH6 PE=2 SV=1	269.0	[0..1]	[267..1]
gi\|114656231 - gi\|114656231\|ref\|XP_001135595.1\| PREDICTED: similar to ATP binding domain 4 [Pan troglodytes]	267.0	[0..1]	[250..70]
gi\|50748366 - gi\|50748366\|ref\|XP_421214.1\| PREDICTED: similar to CG1578-PA [Gallus gallus]	263.0	[0..1]	[255..74]
gi\|123209091, gi... - gi\|74217114\|dbj\|BAE26651.1\| unnamed protein product [Mus musculus], gi\|123209091\|emb\|CAM16523.1\| ATP...	258.0	[0..1]	[250..1]
gi\|49119549, gi\|... - gi\|49119549\|gb\|AAH73100.1\| MGC83562 protein [Xenopus laevis], gi\|148233008\|ref\|NP_001085655.1\| MGC83...	258.0	[0..1]	[250..1]
gi\|108874536, gi... - gi\|157123065\|ref\|XP_001653810.1\| hypothetical protein AaeL_AAEL009372 [Aedes aegypti], gi\|157123063\|...	253.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVAALISGG KDSCYNMMQC IAEGHQIVAL ANLRPDENQV ESDELDSYMY QTVGHHAIDL  60
   61 YAEAMALPLY RRAIRGRSLE TGRVYTQCEG DEVEDLYELL KLVKEKEEIE GVSVGAILSD 120
  121 YQRGRVENVC KRLNLQPLAY LWQRNQEDLL REMIASNIKA IIIKVAALGL DPDKHLGKTL 180
  181 VEMEPYLLEL SKKYGVHVCG EGGEYETFTL DCPLFKKKIV VDSSEAVMHS ADAFAPVAYL 240
  241 RLSRLHLEEK VSSVPADDET ANSIHSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	2d13A
Description:	Crystal Structure of PH1257 from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.062439821475123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: