YRC Public Data Repository - Protein Structure Prediction

Protein:	FAM3D_MOUSE
Organism:	Mus musculus
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAM3D_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|27674093 - gi\|27674093\|ref\|XP_214143.1\| PREDICTED: similar to oncoprotein induced transcript 1 [Rattus norvegic...	377.0	[0..1]	[223..1]
gi\|109132854 - gi\|109132854\|ref\|XP_001089464.1\| PREDICTED: similar to family 3, member A protein [Macaca mulatta]	372.0	[0..1]	[221..1]
FAM3A_PONPY - Protein FAM3A precursor - Pongo pygmaeus (Orangutan) gi\|160213467 - gi\|160213467\|gb\|ABX10995.1\| family with sequence similarity 3, member A (predicted) [Papio anubis] FAM3A_PONAB - Protein FAM3A OS=Pongo abelii GN=FAM3A PE=2 SV=1	372.0	[0..1]	[221..1]
FAM3A_MOUSE - Protein FAM3A OS=Mus musculus GN=Fam3a PE=2 SV=1	371.0	[0..1]	[221..1]
gi\|74009185 - gi\|74009185\|ref\|XP_855396.1\| PREDICTED: similar to family 3, member A protein [Canis familiaris]	367.0	[0..1]	[221..171]
FAM3D - family with sequence similarity 3, member D gi\|114587653, gi... - gi\|114587655\|ref\|XP_001174358.1\| PREDICTED: family with sequence similarity 3, member D isoform 2 [P...	364.0	[0..1]	[221..1]
gi\|147902657, gi... - gi\|27695185\|gb\|AAH43826.1\| Fam3a-prov protein [Xenopus laevis], gi\|147902657\|ref\|NP_001080471.1\| fam...	356.0	[0..1]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVAGLIRVV VFIFTIVTMW VFLRSYTSFS RKTIRLPRWL GITPKDIQTP KSKCGLSKIC  60
   61 PNNFFAFKIS SGAANVVGPS MCFEDEIIMS P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.593	N/A	N/A	g.41.3	Zinc beta-ribbon
View	Download	0.518	N/A	N/A	g.18.1	Complement control module/SCR domain
View	Download	0.280	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.275	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.254	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2

Predicted Domain #2

Region A:
Residues: [92-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRNNVGRGLN VALVNGSTGQ VMKKDSFDMY SGDPQLLLNF LTEIPDSTLV LVASYDDPGT  60
   61 KMNDKIKTLF SNLGSSYAKQ LGFRDSWVFV GAKDLKSKSP YEQFLKNNPE TNKYDGWPEL 120
  121 LELEGCVPRK VM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.898	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.827	N/A	N/A	c.16.1	Lumazine synthase
View	Download	0.790	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.769	N/A	N/A	c.16.1	Lumazine synthase
View	Download	0.711	N/A	N/A	c.16.1	Lumazine synthase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits