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View Structure Prediction Details

Protein: BASP1_MOUSE
Organism: Mus musculus
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASP1_MOUSE.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
135.0 [0..4] [226..711]
gi|8163672 - gi|8163672|gb|AAF73794.1|AF154025_1 surface protein PspC [Streptococcus pneumoniae]
124.0 [0..3] [226..175]
gi|56407144 - gi|56407144|gb|AAV87891.1| C protein immunoglobulin-A-binding beta antigen [Streptococcus agalactiae...
119.0 [0..1] [223..30]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGKLSKKKK GYNVNDEKAK DKDKKAEGAG TEEEGTPKES EPQAAADATE VKESTEEKPK  60
   61 DAADGEAKAE EKEADKAAAA KEEAPKAEPE KSEGAAEEQP EPAPAPEQEA AAPGPAAGGE 120
  121 APKAGEASAE STGAADGAAP EEGEAKKTEA PAAAGPEAKS DAA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [164-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAASDSKPSS AEPAPSSKET PAASEAPSSA AKAPAPAAPA AAEPQAEAPA AAASSEQSVA  60
   61 VKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle