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View Structure Prediction Details

Protein: CE40171
Organism: Caenorhabditis elegans
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40171.

Description E-value Query
Range
Subject
Range
CE29001 - WBGene00022128 status:Predicted TR:Q9N4H0 protein_id:AAK93867.1
828.0 [0..1] [534..11]

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Predicted Domain #1
Region A:
Residues: [1-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKKSNYHI LVAQNFLSNI SVDGSHNDTN LRIFQTKGLP KISPTEKKFS NGASSTTTIR  60
   61 NNESVISLGT SASLGERLSS SNLPQEYAET PQKKTSIFRR IAKIMSSDDV IYSMTATNSR 120
  121 SPILEEGVGR EDSGLIEFRS ESPSCSSNQF SFLRRLKSTI THADRFYICT STNGQPLAVF 180
  181 SYISPNSDYV DPLAPIFANT TVNKKKFRSK SIFGSSDRMR HQAHLSTEEL RPFVFRDAED 240
  241 QVILGQIRRK RNPSPFFTLF DKSPASISRK ERRESFRNGE TSEEMFAETI EVPQAVNRDS 300
  301 SYERGTSIDE KCDLDASRSD EPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [324-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEVIDEYDPI AFSELGIGKR TVIRHECCVA STLHCESAER AKQVINEDFE AKYPMIHLTL  60
   61 SKMKSLKREM AELGVSNGID VYTVATAYVY FEKIILKKLS ENSRKNLKMV TGRPHLEEDG 120
  121 SRREICKAIR GLISKVNRKC VAGAALLVAL KMNDYKKSTI KSYIEQAEDQ LREPKSDLLA 180
  181 YELPICSVLQ FRLQPTIDEI QPHVDRLQFE M

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.85
Match: 1vinA
Description: BOVINE CYCLIN A3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle