YRC Public Data Repository - Protein Structure Prediction

Protein:	CFDP1_MOUSE
Organism:	Mus musculus
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CFDP1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|3115274 - gi\|3115274\|emb\|CAA69396.1\| cp27 [Mus musculus]	184.0	[0..1]	[295..1]
gi\|60654949, gi\|... - gi\|60815014\|gb\|AAX36329.1\| craniofacial development protein 1 [synthetic construct], gi\|60654953\|gb\|... CFDP1 - craniofacial development protein 1	180.0	[0..1]	[295..1]
gi\|114663698 - gi\|114663698\|ref\|XP_511111.2\| PREDICTED: similar to BCNT isoform 4 [Pan troglodytes]	180.0	[0..1]	[295..1]
CFDP1_RAT - Craniofacial development protein 1 OS=Rattus norvegicus GN=Cfdp1 PE=1 SV=1	180.0	[0..1]	[295..1]
gi\|109129226 - gi\|109129226\|ref\|XP_001110030.1\| PREDICTED: similar to craniofacial development protein 1 isoform 4 ...	179.0	[0..1]	[295..1]
gi\|73957383 - gi\|73957383\|ref\|XP_546829.2\| PREDICTED: similar to craniofacial development protein 1 [Canis familia...	177.0	[0..1]	[295..1]
CFDP1_BOVIN - Craniofacial development protein 1 OS=Bos taurus GN=CFDP1 PE=2 SV=1	176.0	[0..1]	[295..1]
CFDP1_MUNRE - Craniofacial development protein 1 OS=Muntiacus reevesi GN=CFDP1 PE=2 SV=1	171.0	[0..1]	[295..1]
CFDP1_CAMDR - Craniofacial development protein 1 OS=Camelus dromedarius GN=CFDP1 PE=2 SV=1	170.0	[0..1]	[295..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFDSEDFS TSDEDEDYLP SGGEYSEDDV NELVKEDEVD GEEQAEKTKG KRRKAQGIPA  60
   61 RKRKQSGLLL EEEEDGKEDS GGSSSEEDEE EQEGGLGSEN ARKKKEDELW ASFLNDVGPK 120
  121 SKAAPGSQTK VAEETEEISS NKPLVKADEL DKPRESEKVK ITKVFDFAGE EVRVTKEVDA 180
  181 ASKEAKSFLK QTEREKPQAL VTSPATPLPA GSG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKRASGMSSL LGKIGAKKQK MSTLEKSKLD WESFKEEEGI GEELAIHNRG KEGYIERKAF  60
   61 LDRVDHRQFE IERDLRLSKM KP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.886057
Match:	PF07572.3
Description:	No description for PF07572.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.389	0.876	basement membrane	a.39.1	EF-hand

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits