YRC Public Data Repository - Protein Structure Prediction

Protein:	APEL_MOUSE
Organism:	Mus musculus
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APEL_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74008940 - gi\|74008940\|ref\|XP_854262.1\| PREDICTED: similar to Apelin precursor (APJ endogenous ligand) [Canis f...	118.0	[0..1]	[77..181]
APEL_RAT - Apelin OS=Rattus norvegicus GN=Apln PE=1 SV=1	103.0	[0..1]	[77..1]
APLN - apelin	99.0	[0..1]	[77..1]
APEL_BOVIN - Apelin OS=Bos taurus GN=APLN PE=1 SV=1	97.0	[0..1]	[77..1]
gi\|114690127 - gi\|114690127\|ref\|XP_001144812.1\| PREDICTED: hypothetical protein [Pan troglodytes]	90.0	[0..1]	[71..83]
gi\|47226217 - gi\|47226217\|emb\|CAG08364.1\| unnamed protein product [Tetraodon nigroviridis]	45.0	[0..15]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLRLCVQAL LLLWLSLTAV CGVPLMLPPD GTGLEEGSMR YLVKPRTSRT GPGAWQGGRR  60
   61 KFRRQRPRLS HKGPMPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits