YRC Public Data Repository - Protein Structure Prediction

Protein:	OAZ3_MOUSE
Organism:	Mus musculus
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OAZ3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|9295421 - gi\|9295421\|gb\|AAF86963.1\| ornithine decarboxylase antizyme [Trachemys scripta elegans]	310.0	[0..9]	[192..34]
OAZ1_CHICK - Ornithine decarboxylase antizyme 1 OS=Gallus gallus GN=OAZ PE=2 SV=3	308.0	[0..9]	[192..32]
OAZ1_RAT - Ornithine decarboxylase antizyme 1 OS=Rattus norvegicus GN=Oaz1 PE=1 SV=3	305.0	[0..2]	[195..34]
OAZ1_MOUSE - Ornithine decarboxylase antizyme 1 OS=Mus musculus GN=Oaz1 PE=1 SV=3	302.0	[0..2]	[195..34]
OAZ1_MESAU - Ornithine decarboxylase antizyme 1 OS=Mesocricetus auratus GN=OAZ1 PE=2 SV=3	299.0	[0..2]	[189..34]
OAZ1_XENLA - Ornithine decarboxylase antizyme 1 OS=Xenopus laevis GN=oaz1 PE=2 SV=2	296.0	[0..21]	[192..44]
OAZ1_BOVIN - Ornithine decarboxylase antizyme 1 OS=Bos taurus GN=OAZ1 PE=2 SV=3	291.0	[0..20]	[191..53]
gi\|32441923 - gi\|32441923\|gb\|AAP82032.1\| ornithine decarboxylase antizyme small isoform [Paralichthys olivaceus]	289.0	[0..2]	[192..26]
OAZ1 - ornithine decarboxylase antizyme 1 gi\|188219647 - gi\|188219647\|ref\|NP_001120840.1\| ornithine decarboxylase antizyme 1 [Pan troglodytes]	286.0	[0..21]	[186..54]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPCCYKSIT YKEQEDLTLR PHCCLPCSCL PCSCLQCSES LGGLQVGRST AQEKDHSQLK  60
   61 ELYSAGNLTV LSTDPLLHQD PVQLDFHFRL TPHSSAHWHG LLCDHRLFLD IPYQALDQGN 120
  121 RESLTATLEY VEEKTNVDSV FVNFQIDRKD RGALLRAFSY MGFEVVRPDH PALPPWDNVI 180
  181 FMVYPLERDL GHPGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	1zo0A
Description:	NMR structure of antizyme isoform 1 from rat
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits