YRC Public Data Repository - Protein Structure Prediction

Protein:	CCR4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	690 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCR4_SCHPO.

Description	E-value	Query Range	Subject Range
CCR4_EMENI - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans GN=ccr4 PE... CCR4_EMENI - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans (strain FG...	375.0	[0..163]	[685..161]
CCR4_USTMA - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis GN=CCR4 PE=3 S... CCR4_USTMA - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis (strain 521 / ...	374.0	[0..158]	[675..141]
CCR4_ASPTN - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus terreus (strain NI...	367.0	[0..163]	[685..161]
CCR4_ASPFU - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus fumigatus GN=ccr4 ... CCR4_ASPFU - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Neosartorya fumigata (strain A...	364.0	[0..163]	[685..162]
CCR4_COCIM - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis (strain R... CCR4_COCIM - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis GN=CCR4 P...	350.0	[0..163]	[685..159]
CCR4_ASPOR - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus oryzae GN=ccr4 PE=... CCR4_ASPOR - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus oryzae (strain ATC...	348.0	[0..163]	[685..230]
gi\|46110322, gi\|... - gi\|46110322\|ref\|XP_382219.1\| hypothetical protein FG02043.1 [Gibberella zeae PH-1], gi\|42546722\|gb\|E...	342.0	[0..163]	[682..173]
gi\|38108572, gi\|... - gi\|39940900\|ref\|XP_359987.1\| hypothetical protein MG05362.4 [Magnaporthe grisea 70-15], gb\|EAA54570....	341.0	[0..150]	[679..1090]
CCR4_PHANO - Glucose-repressible alcohol dehydrogenase transcriptional effector - Phaeosphaeria nodorum (Septoria... gi\|111059442 - gi\|111059442\|gb\|EAT80562.1\| hypothetical protein SNOG_12150 [Phaeosphaeria nodorum SN15]	339.0	[0..161]	[685..77]
CCR4_YARLI - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica GN=CCR4 PE... CCR4_YARLI - Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica (strain CL...	338.0	[0..163]	[687..158]

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Predicted Domain #1

Region A:
Residues: [1-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNPRYTQGT IYPGAHPGLL TPDHQHAAIL SVQNSPALEN SNISEHWKQQ IALATQSRSF  60
   61 SSPHQRAHNA AALARSGGPG FSMNYNARTG AFTGGPNAAG LSSLGGKYNT SSTTTTLTTS 120
  121 TTLNTSSGTT LNSTSKTTTS SVAVDDQKSK SDSKKERRDW TCLDLGGIGL RNVSTDLFKF 180
  181 SFLTELYINH NNLTRLPPEI GKLKNLVILD ASGNSIKTIP PELGLLTELR EVLLFDNMIS 240
  241 VIPAELGTLF QLKILGIEGN PLQDVYKNQI MESGTAGLIA ALRDGCPVGP PPPERGWEKL 300
  301 VSDDDDDVND NVSTSVRDLT AADSNKPSTT SKNLKFTIMS YNVLCERYAT STLYGYTPSW 360
  361 ALSWSYRKDL IMQELGGYNA DIICLQEVDV ENYDTFFAPQ MSLKGYKGVH FPKSRVRTMN 420
  421 EVERRIVDGC ATFFKTSKYV MHEKMVIEYN QAPSLRRQDI KLTSNMYNRV MTKDNISVIT 480
  481 LLENKENGSR LIVANCHIHW DPQFRDVKVI QVAMLMDEIA QVATKFRNMP SKIPSDQLKD 540
  541 ERPTYPEYLK IPILICGDFN S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	2a0zA
Description:	The molecular structure of toll-like receptor 3 ligand binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [562-690]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQGSGVYDFL SSGSISQNHE DFMNNDYGEY TVNGRSHAFN LKSAYGESEA LSFTNYTPGF  60
   61 KGAIDHIWYT GNSLEVTGLL KGVDKDYLSG VVGFPNAHFP SDHICLLAEF KVKQEKTPLP 120
  121 SSKFNNDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.77
Match:	2ddrA
Description:	No description for 2ddrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits