YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19113288
Organism:	Schizosaccharomyces pombe 972h-
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19113288.

Description	E-value	Query Range	Subject Range
gi\|46108496, gi\|... - gi\|46108496\|ref\|XP_381306.1\| hypothetical protein FG01130.1 [Gibberella zeae PH-1], gi\|42545567\|gb\|E...	242.0	[0..2]	[175..193]
gi\|49092646, gi\|... - gi\|67526379\|ref\|XP_661251.1\| hypothetical protein AN3647.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	230.0	[0..2]	[158..180]
gi\|32423273, gi\|... - gi\|32423273\|ref\|XP_332074.1\| hypothetical protein [Neurospora crassa], gi\|28925567\|gb\|EAA34592.1\| pr... gi\|85111209 - gi\|85111209\|ref\|XP_963828.1\| hypothetical protein NCU09382 [Neurospora crassa OR74A]	215.0	[0..1]	[157..211]
gi\|38104200, gi\|... - gi\|39945166\|ref\|XP_362120.1\| hypothetical protein MGG_04565 [Magnaporthe grisea 70-15], gb\|EAA50806....	209.0	[0..1]	[148..228]
gi\|159125456 - gi\|159125456\|gb\|EDP50573.1\| TPR domain protein [Aspergillus fumigatus A1163] gi\|66849254, gi\|... - gi\|70993546\|ref\|XP_751620.1\| TPR domain protein [Aspergillus fumigatus Af293], gi\|66849254\|gb\|EAL895...	190.0	[0..2]	[158..210]
gi\|114193956, gi... - gi\|115391055\|ref\|XP_001213032.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	185.0	[0..2]	[174..210]
gi\|169771277 - gi\|169771277\|ref\|XP_001820108.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767967 - gi\|83767967\|dbj\|BAE58106.1\| unnamed protein product [Aspergillus oryzae]	179.0	[0..2]	[148..211]
gi\|90306655, gi\|... - gi\|90306655\|gb\|EAS36286.1\| hypothetical protein CIMG_01640 [Coccidioides immitis RS], gi\|119194531\|r...	170.0	[0..2]	[161..210]
gi\|111064678, gi... - gi\|169608159\|ref\|XP_001797499.1\| hypothetical protein SNOG_07147 [Phaeosphaeria nodorum SN15], gi\|11...	143.0	[0..13]	[147..122]
gi\|88183338, gi\|... - gi\|88183338\|gb\|EAQ90806.1\| hypothetical protein CHGG_02741 [Chaetomium globosum CBS 148.51], gi\|1162...	119.0	[0..1]	[86..214]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEALQTLASM RISQQKIEEA KDALSKCLQS ISRAATEDSV DLPTYAVRTS IVRLLIEVEM  60
   61 HEEAHQLLVY LQKEDDQILD IWYLLGWNCY VEAQNLQEQG NGSEEEIKEL LMNAKFYFIS 120
  121 ALGVYQKIGW DDEGIKSHIQ ELLEILNGLG VPNMDEENEE AEWETSENEE EMDED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.8
Match:	2c2lA
Description:	Crystal structure of the CHIP U-box E3 ubiquitin ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits