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View Structure Prediction Details

Protein: NUP85_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 675 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP85_SCHPO.

Description E-value Query
Range
Subject
Range
gi|10434102 - gi|10434102|dbj|BAB14130.1| unnamed protein product [Homo sapiens]
601.0 [0..42] [668..18]
gi|114670417 - gi|114670417|ref|XP_511672.2| PREDICTED: nucleoporin 85 [Pan troglodytes]
599.0 [0..42] [668..18]
NUP85_MOUSE - Nuclear pore complex protein Nup85 OS=Mus musculus GN=Nup85 PE=1 SV=1
597.0 [0..42] [668..18]
gi|50556854, gi|... - gi|50556854|ref|XP_505835.1| YALI0F24563p [Yarrowia lipolytica], gi|49651705|emb|CAG78646.1| YALI0F2...
gi|18076820, gi|... - gi|49651705|emb|CAG78646.1| YALI0F24563p [Yarrowia lipolytica], gi|18076820|emb|CAC86054.1| Nup85 pr...
595.0 [0..5] [666..38]
NUP85_RAT - Nuclear pore complex protein Nup85 OS=Rattus norvegicus GN=Nup85 PE=2 SV=1
592.0 [0..42] [668..18]
gi|73964916 - gi|73964916|ref|XP_533121.2| PREDICTED: similar to pericentrin 1 isoform 1 [Canis familiaris]
565.0 [0..42] [671..18]
NUP85_BOVIN - Nuclear pore complex protein Nup85 OS=Bos taurus GN=NUP85 PE=2 SV=1
563.0 [0..42] [668..18]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSDEVDLP VYHLQNAPIE NGKLNDWRSK GRTVAFKLHP FLRKGLAYIN NKEFDENTLK  60
   61 SDKFEEVESL VYEFSTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-675]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLIEPNYLL TAWHELWEEL QDTYMTPILD SEANLLLLTQ FYGKISSLFR SKIIQVLEEL  60
   61 QSRINEGEKD CQPVLDSLWE VESAWRCAEA IYFPPSSPYT LSTGILDWVN AYDPQPIADD 120
  121 GLEIMAYRIP YQHPEFWPYV NKTAIRGLFE QTISCLEMSG LTKEWPVLKE TVDELIDILR 180
  181 YSPCTHQKRI RSVSDFERRW KLWRSRLANL RHVVKKHRDI DSEVLDDFVV LLDILNGNKE 240
  241 VIMLSCAHWQ EYFSALAFLY GPLDCKNPED ISLLYQLATG EDSKFYVNGT IEYEQICVNL 300
  301 CSNEPLNAIK HAYLLDLGLA VHLADLLSKS GHLRDYITEE YPITLREHLI LEYGQCVLES 360
  361 RNLWQTSFAY WKCVADSGYQ RIKACIPYVP LSDVDAKETA LQLCKQLKLR DEAQLVLTHW 420
  421 ADELIARNHY GEALIALDNA ANYSALNRVT WELFDICIAE KKSFSPDKDE LLYELFSSPK 480
  481 ACTPTLASII SPAATIHQYF FYLQHKKELN ASELLVGLLT MVDFPSSRFP KLLELLHEFL 540
  541 NNPLQSNSTD FKLSLVNVYD CIAVLQDQQS TVKDQQLLLS IHERLSSAIS WYFLHLKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2qx5A
Description: No description for 2qx5A was found.

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