YRC Public Data Repository - Protein Structure Prediction

Protein:	YB89_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	736 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YB89_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|15158466, gi\|... - gi\|15890270\|ref\|NP_355942.1\| hypothetical protein AGR_L_318 [Agrobacterium tumefaciens str. C58], gi... gi\|25384809 - pir\|\|E98150 hypothetical ABC transporter ATP-binding protein in bcr 5'region [imported] - Agrobacter...	430.0	[0..138]	[730..1]
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	427.0	[0..183]	[732..14]
gi\|109626138, gi... - gi\|110668391\|ref\|YP_658202.1\| ABC-type dipeptide/oligopeptide/nickel transport systems, ATP-binding ...	427.0	[0..185]	[730..11]
gi\|17133915, gi\|... - gi\|17232270\|ref\|NP_488818.1\| ABC transporter ATP-binding protein [Nostoc sp. PCC 7120], gi\|17133915\|... gi\|25384930 - pir\|\|AB2403 ABC transporter ATP-binding protein all4778 [imported] - Nostoc sp. (strain PCC 7120)	426.0	[0..178]	[732..1]
gi\|53763575, gi\|... - gi\|75908266\|ref\|YP_322562.1\| ABC transporter-like [Anabaena variabilis ATCC 29413], gi\|75701991\|gb\|A...	425.0	[0..178]	[732..1]
gi\|39573949, gi\|... - gi\|42522753\|ref\|NP_968133.1\| ABC-type dipeptide transport system, ATPase component [Bdellovibrio bac...	419.0	[0..177]	[731..1]
gi\|186686173, gi... - gi\|23126088\|ref\|ZP_00107995.1\| COG1123: ATPase components of various ABC-type transport systems, con...	416.0	[0..178]	[732..1]
gi\|115258954, gi... - gi\|116254306\|ref\|YP_770144.1\| putative ATP-binding component of ABC transporter [Rhizobium leguminos...	416.0	[0..181]	[730..11]

Back

Predicted Domain #1

Region A:
Residues: [1-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVIQNNCS EVDPHVLSYC TGYANDAIKD VDEASDHTIS LIRNLLLDAG AREEAVQLIQ  60
   61 NELEKQFKER EEHLDTLQTN GLVRLKETIR MDSQSEISST MGLVGEKMEL DAVKGRKVES 120
  121 RVDRRKLEKA ERKIRAKWEK RTIKAEYESS KLVQPEQKSY EEFYMAVNPL DLSGSNQGKS 180
  181 KDIKIDGIDL AFAGHRILTG ASLTLAQGRR YGLTGRNGIG KSTLLRALSR REIAIPTHIT 240
  241 ILHVEQEMTG DDTPALQSVL DADVWRKYLI QDQEKITNRL STIEKELEEL SKDQTADQAI 300
  301 SRRLERERDE LDLRLLDIQN KLSEMDSDRA ESRAATILAG LGFTQEMQSH ATKTFSGGWR 360
  361 MRLSLARALF CQPDLLLLDE PSNMLDVPSI AFLSEYLQTY KNIVLVVSHD RSFLNEVATD 420
  421 IIHQHSERLD YYKGNFSQFY ATREERCKNQ LREYEKQMEY RKHLQSFIDK FRYNAAKSSE 480
  481 AQSRIKKLEK LPILEKPQTE EEVEFEFPPV EKISPPILQM SDVNFEYVPG HPILKHVDID 540
  541 VQMDSRIGVV GPNGAGKSTM LKLLIEQLHP TSGIVSRHPR LRIAYFAQHH VDTLDLNLNA 600
  601 LSFLAKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #2

Region A:
Residues: [608-736]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPGKGEEEYR RHLGAFGVSG PLALQKMITL SGGQKSRVAF ACLGLQNPHI LILDEPTNHL  60
   61 DMESMDALTR AVKRFQGGVI LVSHDVDFLD KTCTSIWQCD HNVVSKFDGT ISQYKKFCLS 120
  121 QQPTMTIKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits