YRC Public Data Repository - Protein Structure Prediction

Protein:	SPC2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPC2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|50731377 - gi\|50731377\|ref\|XP_417247.1\| PREDICTED: similar to Microsomal signal peptidase 25 kDa subunit (SPase...	229.0	[0..1]	[165..145]
gi\|40787675 - gi\|40787675\|gb\|AAH64957.1\| SPCS2 protein [Homo sapiens]	219.0	[0..1]	[165..48]
SPCS2_PONAB - Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2 SV=1 SPCS2_PONPY - Signal peptidase complex subunit 2 - Pongo pygmaeus (Orangutan)	218.0	[0..1]	[165..48]
gi\|109075548 - gi\|109075548\|ref\|XP_001101980.1\| PREDICTED: similar to Signal peptidase complex subunit 2 (Microsoma...	218.0	[0..1]	[165..48]
gi\|114639385 - gi\|114639385\|ref\|XP_001174940.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	218.0	[0..1]	[165..48]
SPCS2_CANLF - Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1	218.0	[0..1]	[165..48]
gi\|109462490, gi... - ref\|XP_214994.1\| similar to RIKEN cDNA 5730406I15 [Rattus norvegicus], gi\|109462490\|ref\|XP_001066421...	215.0	[0..1]	[165..48]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKYNVSDFK SKFDKELTNH FNKNGYKQSF VFEDIRLLIA IACIIPAGLA FGIEYVYGFG  60
   61 VLKSYLKYLL PLYFLASCLL TFWSSVVKGS TVYVATKKER HIKISADTFL PLKNKPLITT 120
  121 KFTVLKNRNA VQLEWSVPVA HIFEEDGQIS SATFEAEISK YLSQIEN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits